Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01107 AAAAAAAAAAAAAGAAAGAAAGAAGAAGAAGAAAAAGAAAAGGAAAATTTCGAAAATCTATGAAATACTTTTTAAAGTAAAGCAGTGAGAGGCTGGCTTCAAAATTTGAAGGATCTGAAACTTTGGTTAATAGCATATCCCTTTTTTCTGGGCATCAATTACTTTGAATTACTCTTCACATAATCTCTCTGGAAATTTCTTTCTCCAACTCCAATTCTAATGGCAGGGACTGATTACCAAGCCAATCAAGACAAGAATGATTTTCTGCAGATTTTGGCAGCTCAAGGAGTTGAGTTCCTTCTCTCTGGTGAAGAAAAGGTATCCCCAAAATTATGTGCAGGGAAGATGATTTGCCTATTATTTTCAGCAAACTGGTGTAGACCTTGCAGGACTTTCACTCCACAATTGGTTCAACTCTACAACACTTTGCAAAAAAGAGGTGAAAAGCTAGAGATTATCTTCATCTCCTTGGATCATGATGAGAATGAATTTGAACAACACTTCAAGATTATGCCATGGCTCGCTGTGCCATTTGATGACGAGCTGCAGAAACAATTATGCGGCGAGTACCATGTCGATTGCATTCCGTCGCTCGTTCCGCTTTGCAGAGATCGGATGTCGAAAGAAGATGACTTGATTGGCTTCATTGAAGACTATGGTGCTGAAGTATTTCCATATAGTAGGAAGAGGATGCAGGAACTTAAGGCAATGGATTGTGCCAAACGTGTTGAAGGAAAACTTGAAGAACTCTTGGGGAACAGAGGATATAACTATGTTATTTCTAGACATGGAGGCAAGACACAAATATCTGAGCTGATTGGGAAGACAATAGGCCTTTATTTTGGTGCATATTGGAGCCCTCCAAGTCGTTCCTTCACATCAAAACTTTCTAAAGTATACAAAGAAATTATGGACAAAACACAAAGTCACTCCTTAGAAGTAATCTTCGTCTCCACTGACCGAAACCTGGACGAATTCAAACTGAACATAACGGACATGCCATGGCTGGCAATCCCCTACGAGGACGAGACCCGGCAAGATCTCTACAGGATCTTCGACGTCAAGGCAATCCCAACTCTAGTCCTGATCGGGGCGGATGGAAAGACGTCAAGTGAGAACGGAAGAGGCTTGGTTTCATTGTATGGAGCAGAAGCATTCCCATTTACAGAAGAAAGAATAGATGAGTTGGAAGCAGCAGTGAAAAAGGAAGCAGAGGAATTGCCTTCAAATGTGGAGGATATAAAGCATGAACATGTGCTTAAATTGGAGTTGGCAAAAGCTTATGTTTGTGATTTTTGCAAAAGGCATGGAAGGTTTTGGGCATTTTCTTGTCATGTTTGTGATTATGATCTTCATCCAACTTGTGTTCACCTGACAAATGTATAAAAGTAGTCATCAAGTTGGGGACAGAAATCAAGCTAAACTATACATAATAGAATGTTTCATGTTTTTTTTTTAACATTCATGGACTAATGGTTGAATCAA 1485 39.46 MAGTDYQANQDKNDFLQILAAQGVEFLLSGEEKVSPKLCAGKMICLLFSANWCRPCRTFTPQLVQLYNTLQKRGEKLEIIFISLDHDENEFEQHFKIMPWLAVPFDDELQKQLCGEYHVDCIPSLVPLCRDRMSKEDDLIGFIEDYGAEVFPYSRKRMQELKAMDCAKRVEGKLEELLGNRGYNYVISRHGGKTQISELIGKTIGLYFGAYWSPPSRSFTSKLSKVYKEIMDKTQSHSLEVIFVSTDRNLDEFKLNITDMPWLAIPYEDETRQDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVSLYGAEAFPFTEERIDELEAAVKKEAEELPSNVEDIKHEHVLKLELAKAYVCDFCKRHGRFWAFSCHVCDYDLHPTCVHLTNV 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27122321 27127807 - XM_039030085.1 Bhi04g01107 32716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01107 388 Gene3D Glutaredoxin 19 157 - -
Bhi04g01107 388 Pfam Thioredoxin-like 201 295 IPR012336 -
Bhi04g01107 388 Pfam Thioredoxin-like 41 126 IPR012336 -
Bhi04g01107 388 PANTHER THIOREDOXIN 3 386 - -
Bhi04g01107 388 CDD TryX_like_TryX_NRX 184 315 IPR045870 GO:0004791
Bhi04g01107 388 ProSiteProfiles Thioredoxin domain profile. 6 175 IPR013766 -
Bhi04g01107 388 ProSiteProfiles Thioredoxin domain profile. 176 325 IPR013766 -
Bhi04g01107 388 SUPERFAMILY Thioredoxin-like 188 296 IPR036249 -
Bhi04g01107 388 PANTHER NUCLEOREDOXIN 3-RELATED 3 386 - -
Bhi04g01107 388 SUPERFAMILY Thioredoxin-like 29 144 IPR036249 -
Bhi04g01107 388 Gene3D Glutaredoxin 180 317 - -
Bhi04g01107 388 SUPERFAMILY Cysteine-rich domain 333 385 IPR046349 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01107 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101207967 699.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01103 Bhi-Chr4:27122321 Bhi04g01107 Bhi-Chr4:27122321 2.12E-23 dispersed
Bhi04g01104 Bhi-Chr4:27122321 Bhi04g01107 Bhi-Chr4:27122321 0 dispersed
Bhi04g01105 Bhi-Chr4:27122321 Bhi04g01107 Bhi-Chr4:27122321 0 dispersed
Bhi04g01107 Bhi-Chr4:27122321 Bhi06g00148 Bhi-Chr6:3555121 2.16E-63 dispersed
Bhi04g01106 Bhi-Chr4:27122321 Bhi04g01107 Bhi-Chr4:27122321 2.12E-23 tandem
Bhi04g01107 Bhi-Chr4:27122321 Bhi04g01108 Bhi-Chr4:27122321 2.37E-23 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g245 . . . . . Bpe02g00227 . . . . Cma01g01585 . . . . . . Bhi04g01107 Tan02g2604 . . . . . . . . . . . . . . . . . . . Cme03g01706 . . . . . . . . . Cmo01g01633 . Cma09g00539 . . . . . . . . . . . . Cla08g01256 . . . . . . Lsi08g01117 Csa02g02310 . Cme04g00320
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010757 0 6 0 0 0 1 1 1 1 1 0 1 0 1 1 1 1 2 1 1 1 1 1 1 1 0 0 2 5 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01107 Bhi_Chr04 FPKM 0.120567 0.212868 0.0 0.0 0.0 0.0 0.0 0.19551 0.085839 0.0