Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01129 AAACCCTATATATCACTCCCACACTCCTTTCCTCTCTCCCCTTTTCTCTCTCCTCCTCTCTTTCTGCCGAATGAAGCATAATTCCTCTATTTCCGTCGTCGTCCGCCGTCTTATTCCGATCTTCCGACGACAAATTCACTATGAAGCGTAGCGCCTCCGAGTTGGCTCTTGAAGAATTCCTCAAAAGAGCCGCCACGATCTCTCCCCGCGACGTTATCGACCCCGATGACGACATTTTCAAAATCGAACAACGCGATCAACAAGTCGTTAGAAGCCCTAAAAGAGGCAAAAACTTTCAGGATTCCACCGATGCCACCTGCTTCTTTGGCGACATCGATTTCAGCTATTTCTTTGTAAAAAATAATCGGTTGCAGGAGATAATGGACGCAATTGTTAACTGTGGGGGTGGGCTGGCGGAGGCTTCTTTATGGTCACAGAATCTTACTCATAAGCATTCAAGCTTTTCACCCACTATAGATTCTCAATCTTCTATTGTGAGTAGCCCAACATCAGCCAGTAATTTGATGGGCAGAGATCACCAAAGAGGTAACAATAGTGGATCCTCTGAAGATCAATCTGATGATGAAATTGAAGCTGGCTCTTGTGAACAAAGCACTGACCCTCTTGCTTTGAAGAGAATCAGAAGAATGATCTCTAATAGGGACTCTGCAAGAAGATCAAGAAAAAGAAAACAAGCTCATTTGGCTGAACTTGAGAACCAGGTGAAACAATTGAAAGGAGAAAATGAAACCTTGTTCAACCAGCTTTTAGATGCCAGTCAACAATATCGTGATGCTAATACGAACAACCGTGTCCTTAAATCAGACGTAGACGCATTGAGAGCTAAGGTGAAGTTGGCTGAAGATACACTTGCTAGGGGCTCAATGACCTGCAGCTTAAATCAGCTGCTGCAAAGTCATTTGAGCACGCCGCAACCACTAACGGCGCTTCGGAGAATGTCGAATGTTGCATCACCACTCGGTCTACCTGGAGATGACGTTTCTTATTCGGGTGTGACGATGTCGGGGCAGAACCCGACCGCAGGGCTCCCGAACTCAGATATGCATATGAAAAGTGGAATGGGTAGTGAGGCTGTTAGCTGTGTTTCTGGGATATGGCCTAGAAATTAGCCTTTCCTCTCTTTGCCTTTCAACACCAGCATTGTTTTATCACTGTCATGTGTTTGGCTTGGCTTGTATGATAGATAGTACTTCAGACTTCTCCCTTTCTGTTTGCTGTGTTAATTTTCAACAAGGCATTTCTCATTTGCTTGCTTTTTATGGTCATTATGAATTCCCGTTTTACTC 1307 44.53 MKRSASELALEEFLKRAATISPRDVIDPDDDIFKIEQRDQQVVRSPKRGKNFQDSTDATCFFGDIDFSYFFVKNNRLQEIMDAIVNCGGGLAEASLWSQNLTHKHSSFSPTIDSQSSIVSSPTSASNLMGRDHQRGNNSGSSEDQSDDEIEAGSCEQSTDPLALKRIRRMISNRDSARRSRKRKQAHLAELENQVKQLKGENETLFNQLLDASQQYRDANTNNRVLKSDVDALRAKVKLAEDTLARGSMTCSLNQLLQSHLSTPQPLTALRRMSNVASPLGLPGDDVSYSGVTMSGQNPTAGLPNSDMHMKSGMGSEAVSCVSGIWPRN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27409675 27413605 + XM_039028139.1 Bhi04g01129 32738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01129 329 CDD bZIP_plant_GBF1 166 217 IPR045314 GO:0003700|GO:0006355
Bhi04g01129 329 MobiDBLite consensus disorder prediction 105 157 - -
Bhi04g01129 329 Pfam bZIP transcription factor 163 209 IPR004827 GO:0003700|GO:0006355
Bhi04g01129 329 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 168 183 IPR004827 GO:0003700|GO:0006355
Bhi04g01129 329 PANTHER BASIC LEUCINE ZIPPER 9 1 327 - -
Bhi04g01129 329 SMART brlzneu 161 225 IPR004827 GO:0003700|GO:0006355
Bhi04g01129 329 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 163 226 IPR004827 GO:0003700|GO:0006355
Bhi04g01129 329 MobiDBLite consensus disorder prediction 105 143 - -
Bhi04g01129 329 Coils Coil 174 243 - -
Bhi04g01129 329 Gene3D - 164 220 - -
Bhi04g01129 329 PANTHER BASIC LEUCINE ZIPPER 63 1 327 - -
Bhi04g01129 329 SUPERFAMILY Leucine zipper domain 164 212 IPR046347 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01129 K25784 BZIP9_10_25_63; bZIP transcription factor 9/10/25/63 - csv:101210908 546.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01129 Bhi-Chr4:27409675 Bhi06g01780 Bhi-Chr6:49889632 1.93E-26 dispersed
Bhi04g01129 Bhi-Chr4:27409675 Bhi04g01130 Bhi-Chr4:27409677 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g231 . . . . . . . . . . . . . . Sed01g1291 . . Bhi04g01129 Tan02g2590 Cmetu03g1692 . . . . . . . . . . . . . Cone17ag1096 Cone20ag0619 . . . Cme03g01717 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01246 Cam08g1704 Cec08g1284 Cco08g1405 Clacu08g1401 . Cre08g1186 Lsi08g01109 Csa02g02299 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006028 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
935 PF00170 bZIP_1 2.10E-14 CL0018 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01129 Bhi_Chr04 FPKM 130.159256 139.179733 36.960026 36.479763 84.176788 79.327538 78.543694 51.37537 52.136173 49.464123