Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01156 GCGAGTACGCGGGTGGTACGTTCGATCCCCGGCATCGGCGTTTTTATTATTTTTTTTTTCCTTCTTACGTGACGGTGCGACGGTACAATCGAGCAGATACCTGAAAATCATTGCAAAGAATCCGTAAATAAGCCATCTCATCTGCCCAACATCAGTCCACCATTCACCTGCCTGCTAAATCTTGAATTTCTTGTAGATTTTCAATTTCCCGTTGATCCTTTTTTTATTTCTGCATCTGGGTCCTTTGGTTATGGCGTTCCATGTGTTTTCATCCACAAAATTGGGTTGAAAATAGGTTACTTCACTTCCATTTCTTGTGCTTTTATCTGGGTTTTCTTTCGTTTTACCGTTCAGCAGAAGAGTATGTTTGTAGTTTTCCAAGATTAACTTCTTGAAGTTGAAGTTTTTTGTTGAATGGAATGGAGCTTTACTTTGATCGAACTCTATCTTTGTTCTGTGGAAAACTTTTGTTCTGGATTGGGTGCTCCATGCGAAAAAACTGGCAAAATTATTACATTAGTTGATTCTGCATAAGAAATCGAGGCATTGGCTACTTCAATTTTCTACCCTCTGCTGTTGATAGCAGGGGACTACGATCCATGGATGCCTCACGAGATCTGTTATTTACTGTTCCGGATCCACATTTTCGAAACATCGTCGAATACTTAATGTAGAAGGATATTCATTATGGTAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAGATTGATAAGGAAGGGAACTCAGAGGTTTTGGAACTTGAGAAGGCTACGATAATGAGACATTGTTCTTTACCTTCTAGAGATATGCGACTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGTCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTTTTTTAATGAACTCCTTAGATGGATGTGCTGCACAGTACAAGTCAGAATTATGCAAGCGTTTGCAGGCAAATAAAGACCAATCAGATGATTTGCCCTTTGAATTTAGGGCTATGGAGCTGGCTCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAAGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAGCACCCTTAATCTTGAAAGAGTTCGAAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGATGATGATGGTGATATGGCTGAGATGTATCTAACAGAGAAGAAACAAAGATTGGAGGCAAACATCAGAAGTAACTCGTATTTGGAAGCTAATTTCTTTGGGAAACAGCTACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTACAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCTAGCAGCTTGATAAGTTCATCAACCAGCGGAGATAACATTGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGATGACATGCTCAGTAAATTGTTATCGCTCAAAGAATCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTATTTACTGCAGCTACATTCTTGGCTACAATGTTTGCAGCTTTAACAGCGGTTTTTGGCATGAATTTTGTCGACAATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGTCTTGTGTATTTCGGTTTTCTATTATATTTTAGGTACAAGAAAATATTCCCACTGTAATTGAGCTAAGAGAATATATACCTCTCTGCAAATGGAACTAAGATTTGAAAATGGTATGTCGTGTAAATATTTCCTGTGAAAATCATATTTGTGTGAAACTAGTTGTTTTACGTTTTTAGTCA 1943 39.17 MVGVKKRGHGNRSWIKIDKEGNSEVLELEKATIMRHCSLPSRDMRLLDPLFLCPSTILGREKSIVVSLEQIRCIITSDEVFLMNSLDGCAAQYKSELCKRLQANKDQSDDLPFEFRAMELALELTCSLLDTQVKGMEMEIYPLLDDLASSISTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTEKKQRLEANIRSNSYLEANFFGKQLPKSAPVSPVGSANGTYKLQRAFSSIVNSSSLISSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFVDNVFEHPTSFQLIVYLTLIACGLVYFGFLLYFRYKKIFPL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27950753 27955450 - XM_039029390.1 Bhi04g01156 32765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01156 377 Gene3D - 3 85 - -
Bhi04g01156 377 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 2 377 IPR039204 -
Bhi04g01156 377 CDD Mrs2_Mfm1p-like 14 374 IPR039204 -
Bhi04g01156 377 Gene3D Magnesium transport protein CorA, transmembrane region 88 308 - -
Bhi04g01156 377 Coils Coil 166 186 - -
Bhi04g01156 377 PANTHER MAGNESIUM TRANSPORTER MRS2-5 2 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01156 K16075 MRS2, MFM1; magnesium transporter - csv:101220835 660.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01156 Bhi-Chr4:27950753 Bhi11g01451 Bhi-Chr11:42215403 7.04E-145 dispersed
Bhi04g01155 Bhi-Chr4:27950753 Bhi04g01156 Bhi-Chr4:27950753 0 tandem
Bhi04g01156 Bhi-Chr4:27950753 Bhi04g01157 Bhi-Chr4:27950753 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi11g01453 . 1 447 MRS2 Gene Family AT1G16010 84.6 1.2e-205 713.4
Bhi11g01451 . 1 447 MRS2 Gene Family AT1G16010 84.6 1.2e-205 713.4
Bhi11g01452 . 1 371 MRS2 Gene Family AT1G16010 84.9 3.3e-168 589.0
Bhi04g01155 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi04g01156 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi04g01157 . 1 377 MRS2 Gene Family AT1G16010 51.9 1.6e-106 384.0
Bhi12g02261 . 1 366 MRS2 Gene Family AT5G64560 81.5 1.3e-160 563.5
Bhi05g00284 . 1 372 MRS2 Gene Family AT5G64560 69.2 3.1e-130 462.6
Bhi01g01584 . 59 442 MRS2 Gene Family AT3G58970 70.8 1.2e-141 500.7
Bhi01g01583 . 59 442 MRS2 Gene Family AT3G58970 70.8 1.2e-141 500.7
Bhi04g01155 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi04g01156 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi04g01157 . 3 377 MRS2 Gene Family AT2G03620 68.8 1.3e-137 487.3
Bhi11g01453 . 13 447 MRS2 Gene Family AT2G03620 53.0 7.2e-112 401.7
Bhi11g01451 . 13 447 MRS2 Gene Family AT2G03620 53.0 7.2e-112 401.7
Bhi11g01452 . 13 371 MRS2 Gene Family AT2G03620 53.4 2.9e-89 326.6
Bhi01g01584 . 59 441 MRS2 Gene Family AT4G28580 50.5 2.3e-91 333.6
Bhi01g01583 . 59 441 MRS2 Gene Family AT4G28580 50.5 2.3e-91 333.6
Bhi12g02261 . 1 328 MRS2 Gene Family AT5G09690 75.9 1.6e-127 453.4
Bhi05g00284 . 1 334 MRS2 Gene Family AT5G09690 64.1 4.1e-107 385.6
Bhi11g01453 . 40 383 MRS2 Gene Family AT5G09690 50.3 8.9e-78 288.1
Bhi11g01451 . 40 383 MRS2 Gene Family AT5G09690 50.3 8.9e-78 288.1
Bhi12g02261 . 23 288 MRS2 Gene Family AT5G09720 68.0 2.1e-89 326.6
Bhi05g00284 . 36 294 MRS2 Gene Family AT5G09720 60.9 3.2e-74 276.2
Bhi11g01453 . 1 447 MRS2 Gene Family AT1G80900 83.4 6.7e-201 697.6
Bhi11g01451 . 1 447 MRS2 Gene Family AT1G80900 83.4 6.7e-201 697.6
Bhi11g01452 . 1 371 MRS2 Gene Family AT1G80900 84.6 4.1e-166 582.0
Bhi04g01155 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi04g01156 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi04g01157 . 1 377 MRS2 Gene Family AT1G80900 53.4 5.3e-105 379.0
Bhi08g00117 . 18 455 MRS2 Gene Family AT5G22830 69.5 1.2e-157 553.9
Bhi08g00116 . 18 462 MRS2 Gene Family AT5G22830 68.2 9.8e-155 544.3
Bhi08g00115 . 18 462 MRS2 Gene Family AT5G22830 68.2 9.8e-155 544.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008212 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01156 Bhi_Chr04 FPKM 0.195205 0.274982 0.919822 0.716213 0.472695 0.872533 0.598643 0.461628 0.558383 0.246555