Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01166 GGGTTTGGGAAGTGAGAGAGAGAGAGAGTTATAAATAGGAGAATTGTAATGGGGAAATAAAGAAAGATAAGAGAAAAGAAAGAAAAAGAATGGGAAGAGGGAGGGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTATGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTATGAAAGACATAGCTATGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGGTTTACAGTATTCACAGAGACGATTTCTTGGAGAAGAATTGGATGATTTGGAGACGAAGGAACTGGATCAACTAGAAATTCAATTGGAAATGTCTCTCAAGCAAATCAGATCTACTAAGAGCCAAACAATGTTTGATCAGTTATCTGATCTCCAAAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCCTTAAGGAAGAAGTTGGAGGAAAGTAGTGCATCTCTTCATACATCATGGGATTCTTCAGAGCCCAACAATTTAAAATATTGCAGACAACCTGGGGGCTTTCTTCAAAGCAATAATAATAATAATATCATTGCATTGGAAAATAGTTACAATACAGGAGAAGTTTCAAATCAAGAAAATGTTATAAACTCTGGGCCAGATGGTAATGGATTGCCTTCACACTGGATGCTGCTTTGATCTATTCTCAAATAAATTTACAAAAACCATAACTCTATTTCAATCCATTCAATATTGTAACAGTAAAAATATATGTGATTATAATAAATTTACGAACCATATAATTATCTAGTGTCCCTTAAAAAGATATATATAATTATCTAGTGAATACTTCATTTTCATCCATA 988 35.73 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEGLQYSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSASLHTSWDSSEPNNLKYCRQPGGFLQSNNNNNIIALENSYNTGEVSNQENVINSGPDGNGLPSHWMLL 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28310982 28317447 + XM_039030176.1 Bhi04g01166 32775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01166 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi04g01166 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi04g01166 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi04g01166 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Bhi04g01166 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi04g01166 243 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bhi04g01166 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Bhi04g01166 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi04g01166 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi04g01166 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi04g01166 243 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 229 - -
Bhi04g01166 243 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bhi04g01166 243 Coils Coil 124 144 - -
Bhi04g01166 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g01166 243 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g01166 243 Coils Coil 150 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01166 Bhi-Chr4:28310982 Bhi08g01063 Bhi-Chr8:34598902 4.47E-80 dispersed
Bhi06g00226 Bhi-Chr6:5365627 Bhi04g01166 Bhi-Chr4:28310982 4.95E-42 dispersed
Bhi04g01166 Bhi-Chr4:28310982 Bhi04g01167 Bhi-Chr4:28326432 1.03E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
938 PF01486 K-box 7.00E-27 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01166 K09264 - csv:101220998 416.387