Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bhi04g01166 | GGGTTTGGGAAGTGAGAGAGAGAGAGAGTTATAAATAGGAGAATTGTAATGGGGAAATAAAGAAAGATAAGAGAAAAGAAAGAAAAAGAATGGGAAGAGGGAGGGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTATGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTATGAAAGACATAGCTATGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGGTTTACAGTATTCACAGAGACGATTTCTTGGAGAAGAATTGGATGATTTGGAGACGAAGGAACTGGATCAACTAGAAATTCAATTGGAAATGTCTCTCAAGCAAATCAGATCTACTAAGAGCCAAACAATGTTTGATCAGTTATCTGATCTCCAAAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCCTTAAGGAAGAAGTTGGAGGAAAGTAGTGCATCTCTTCATACATCATGGGATTCTTCAGAGCCCAACAATTTAAAATATTGCAGACAACCTGGGGGCTTTCTTCAAAGCAATAATAATAATAATATCATTGCATTGGAAAATAGTTACAATACAGGAGAAGTTTCAAATCAAGAAAATGTTATAAACTCTGGGCCAGATGGTAATGGATTGCCTTCACACTGGATGCTGCTTTGATCTATTCTCAAATAAATTTACAAAAACCATAACTCTATTTCAATCCATTCAATATTGTAACAGTAAAAATATATGTGATTATAATAAATTTACGAACCATATAATTATCTAGTGTCCCTTAAAAAGATATATATAATTATCTAGTGAATACTTCATTTTCATCCATA | 988 | 35.73 | MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEGLQYSQRRFLGEELDDLETKELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSASLHTSWDSSEPNNLKYCRQPGGFLQSNNNNNIIALENSYNTGEVSNQENVINSGPDGNGLPSHWMLL | 243 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 28310982 | 28317447 | + | XM_039030176.1 | Bhi04g01166 | 32775 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bhi04g01166 | 243 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | SUPERFAMILY | SRF-like | 2 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977|GO:0045944 | |
Bhi04g01166 | 243 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 229 | - | - | |
Bhi04g01166 | 243 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | PANTHER | DEVELOPMENTAL PROTEIN SEPALLATA 1 | 1 | 229 | - | - | |
Bhi04g01166 | 243 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677|GO:0046983 | |
Bhi04g01166 | 243 | Coils | Coil | 124 | 144 | - | - | |
Bhi04g01166 | 243 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bhi04g01166 | 243 | Pfam | K-box region | 85 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bhi04g01166 | 243 | Coils | Coil | 150 | 173 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bhi04g01166 | Bhi-Chr4:28310982 | Bhi08g01063 | Bhi-Chr8:34598902 | 4.47E-80 | dispersed | |
Bhi06g00226 | Bhi-Chr6:5365627 | Bhi04g01166 | Bhi-Chr4:28310982 | 4.95E-42 | dispersed | |
Bhi04g01166 | Bhi-Chr4:28310982 | Bhi04g01167 | Bhi-Chr4:28326432 | 1.03E-61 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
938 | PF01486 | K-box | 7.00E-27 | No_clan | Bhi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bhi04g01166 | K09264 | - | csv:101220998 | 416.387 |