Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01167 GTTAGATTTTTTTTTGTTTTTTGTGTTTTTTTGTTTTTGCTTCTTCCTTTCTTTGAGTAGTAGCAGCAGCAGCAGCAGCAGCCTGTTTTTGGGTAACTGGGTTTTGTTTGAAAAATAATAATAAGAAGAAAAAGGAAAGAAAATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAGAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTTAAGAAGGCTCATGAAATCTCTGTTCTCTGTGATGCTGAAGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTTGAACGATATGAGAGATATTCTTACGTGGGAAGGCAGCAAATTGCAGCTTCTGAATCTGAATTTTCTCATGAAAATTGGACTCTCGAATACTACAGACTCAAGTCCAAAGTCGAACTTTTACAAAGAAACAACAGTCATTATATGGGTGAAGATTTGGATTCACTGAGTGTCAAAGAACTGCAGAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCCAGAAAAAACCAACTTATGTATGATTCCATCTCTGCACTCCAAAGAAAGGAAAGAGCAATACAGGAGCAAAATGCCCTACTGGCTAAGCAGATCAAGGAGAAGGAAAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTCTTATTCCCATCAGCTCCTCATCCCTCTCTAAACATTGGGCTTGCAAGTTTTGATGGTCACGAATGAATCTTGTTGCACGTCGGGAATTTTCGGTGGTGATCGGATTAGTATCGAAGAAGTGCACGGGGAAGAAGAGGAGGAGGAGGAGGAGGGATGTAGCTAGCTTAATAATGGAAAAGGGAACTAGTTATACCCTATAAGTGTAATGCTTTGAGTTATATGAAGGGTTTTCTTTCTGTGGAGCTTTTGTTAACTTGACAAAGAAAACATTTGAACTTTGTTGTGTTTGAGATATTCTACTAAAAAACTTGAATGTAATCAGA 1071 38.75 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQIAASESEFSHENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPSAPHPSLNIGLASFDGHE 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28326432 28333848 + XM_039030401.1 Bhi04g01167 32776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01167 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bhi04g01167 223 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Bhi04g01167 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bhi04g01167 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bhi04g01167 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g01167 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 215 - -
Bhi04g01167 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bhi04g01167 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bhi04g01167 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bhi04g01167 223 Coils Coil 127 147 - -
Bhi04g01167 223 Coils Coil 153 176 - -
Bhi04g01167 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bhi04g01167 223 Pfam K-box region 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi04g01167 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bhi04g01167 223 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 215 - -
Bhi04g01167 223 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02244 Bhi-Chr1:53579786 Bhi04g01167 Bhi-Chr4:28326432 1.18E-86 dispersed
Bhi04g01167 Bhi-Chr4:28326432 Bhi08g01059 Bhi-Chr8:34581833 6.23E-92 dispersed
Bhi04g01166 Bhi-Chr4:28310982 Bhi04g01167 Bhi-Chr4:28326432 1.03E-61 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
939 PF01486 K-box 2.60E-29 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01167 K09264 - csv:101219414 394.045