Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01192 TGAGGTCAGTCGTATGGGATTCTTCTGACGGATGCATCCCACTGAAACTCGCTCGTGTTCGGCACCAGGCAATCCGGCCGTCTAAAGCGCCCCCACGGCGGCTCCGTTCACCGATAACTGCCCCTGTGCGGCGGCAGCTCTGCTGCTCAGCCATGGCTTTTACATCTGCCATTCCTTAACATCAAATATCAGCCAAGTTCCACAACCTTCCCTTCGCTTCCCTACTCTTTTCGTTCGACCTCCTCAAACAACATTGCACTTCGATTTTGGTGCTTGGCAGCGTCTTCGAATTGGTGCAATTCCGTAAGTATTCTGTTTCCGGAGCTGTACAGGAAGTTGAAGTCTCCGTACAGAAGGATTGGAGGCTTGGACCGGCCGACCTGAATAAAATCTAAGTATGAGAACGGGAAAAAGCAATCAGGAAGACGAAGAGTACGAGGAGGATGAGCTAGTTGCCAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAACATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAAATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGCGATCAAAAGAGAGATACTGCTTCATTTTTATTGGAGGTGATTGAGTATGTTCAGTATTTACAGGAGAAGGTGCAGAAATACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTAATCCCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAATCTGTAAAAAATGGTTCTGCTTCAGGACCAACGTATTCTGGGAAGTTTGATGATAACAACATTTCGATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTTGACTCCCACTCAGGCAGAGATATTCTACAGGACGCCGACATAACAAATAAAGTTCCACATCCCATGTCTCTGGAAGGAAATATGCATGCTTCTATCCGTAGTGACACCGTTCTCGATCAATCGCTCCACATTCCAATTTCTGATGCACAGACAACAGAATGTCCCATCACCAACAATGCATCAAACCAACCGGAAGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTCAGTTAGCTTGTTCAAGTCCCAGCATGTATAGGATGTCTGCATAGTT 1213 46.17 MRTGKSNQEDEEYEEDELVAKREGPSSTSNAISNIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNNISISPAMLASSQNPLDSHSGRDILQDADITNKVPHPMSLEGNMHASIRSDTVLDQSLHIPISDAQTTECPITNNASNQPEEMAIEGGTISVSSVYSEGSVSLFKSQHV 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 28636017 28641063 - XM_039030181.1 Bhi04g01192 32801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01192 266 CDD bHLH_AtBIM_like 48 124 - -
Bhi04g01192 266 MobiDBLite consensus disorder prediction 1 62 - -
Bhi04g01192 266 SMART finulus 55 105 IPR011598 GO:0046983
Bhi04g01192 266 Gene3D - 47 119 IPR036638 GO:0046983
Bhi04g01192 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 120 IPR036638 GO:0046983
Bhi04g01192 266 MobiDBLite consensus disorder prediction 23 43 - -
Bhi04g01192 266 PANTHER TRANSCRIPTION FACTOR BIM2 1 258 - -
Bhi04g01192 266 MobiDBLite consensus disorder prediction 44 62 - -
Bhi04g01192 266 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983
Bhi04g01192 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Bhi04g01192 266 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 1 258 IPR044295 GO:0003700|GO:0006351|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01192 Bhi-Chr4:28636017 Bhi02g00050 Bhi-Chr2:1039629 1.49E-54 dispersed
Bhi04g01191 Bhi-Chr4:28634849 Bhi04g01192 Bhi-Chr4:28636017 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
941 PF00010 HLH 1.30E-13 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01192 - - csv:101217750 468.003