Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01226 ACCAAAAAAGCCATCATATATCTTTTTACTTAACCCCCAAAAAAACATCATCTCCTTTCTCTGCTCATCTCTCTACTGAACAAAGAGTCTCTCCATGGGCAACCTCTGCGGCACTCCAGTCGATGCCCACACCCCTCCTCCTACTAAACCTCCCTCCCCAGTGACTTCCCATCGCCACAGTTCCACCACCACGCCACAGAATCTCAAGGTTTATAGTCTGTCGGAGCTCAAGACGGCCACCAAGAATTTCCGACCCGACACGGTGCTGGGAGAGGGCGGATTTGGAAGGGTTTTTAAAGGATGGGTGGACGAGGTTACTTACGCGCCGTCGTCCAAGGTCGGCGTCGGAATTCCCGTTGCCGTTAAAAAGTCAAACCCCGACAGCTCTCAGGGTCTACGCGAATGGAAGGCGGAAGTGGAATTTTTGGGGAAATTTAGCCATCCAAATGTGGTGAAATTGGTCGGATATTGTTGGGAAGAAAAGCAATTTCTTCTTGTTTATGAGTACATGCAAAGGGGTAGTTTGGAAAACCACTTGTTCCGAAAAGGTGTAGAGCCTCTATCATGGGAAACACGAATTAAAATAGCTACAGGGGCAGCACGTGGTTTGACGTTTCTTCACACGTCGGAGAAGAGCGTGATTTACCGTGATTTTAAAGCCTCCAATATTCTGTTGGATGGGAAGTTTAACCCAAAGTTGTCAGATTTTGGGCTTGCGAAACTGGGCCCATCCAATGGTAACTCCCACGTCAGCACAAATCCAGTTGGCACCTACGGCTATGCTGCCCCTGAGTACATTGCAACTGGACATTTGTATATAAAAAGTGACGTGTACGGGTTCGGCGTGGTTCTGTTGGAGCTGCTGACCGGACTACGGGCAGTGGACCCAAACCGGCCGAGTGGGTCACACAACTTGGTGGGGTGGGCGGAGCCATCACTGAGCAGCAAGAAGAAGATAAAGAAACTGGTAGACCCAAGGCTCGGGGACGACTACTCGCCCAAAGGAGCCTGGGCCACAGCGGAACTCATACTAAAATGCTTGGAATCGGACCCCAGAAAGCGGCCGTCCATGGAAGAAGTTTTGGTTATGCTAGAAAAAATCAGTTCTCTTAAAGACAGGCCCAAGGAGCCCAAATCAAGGGCTAGGACGCCCAGCCGTTATTGACTTCTGGCCTCACTCCTCTGACCACTCAAACCTCAATGTCGTTCCAATTGGAGGCCGATTTACAGTGAACTATTGGCCTATTTTAAGTGGTTATGTATTAATTTCACCTTTTTTTTTTTTTTTTTAGAGTTTGTAGATGTGATAGTGTATGTATCAATCAAAGTTAGTCCCCACTTTTTGTTTCATAACATATGGAAATGTTAGAAAATATTCTGATTCTCTTGGGGAGATGAAAGCATTTGGTTGTGTTTCGAAACCAAATAGTGGTTTTCTTCTGTTTCTGAAAAAAGGAAGAATTTAGAAAAATTGTAGATGTA 1482 46.49 MGNLCGTPVDAHTPPPTKPPSPVTSHRHSSTTTPQNLKVYSLSELKTATKNFRPDTVLGEGGFGRVFKGWVDEVTYAPSSKVGVGIPVAVKKSNPDSSQGLREWKAEVEFLGKFSHPNVVKLVGYCWEEKQFLLVYEYMQRGSLENHLFRKGVEPLSWETRIKIATGAARGLTFLHTSEKSVIYRDFKASNILLDGKFNPKLSDFGLAKLGPSNGNSHVSTNPVGTYGYAAPEYIATGHLYIKSDVYGFGVVLLELLTGLRAVDPNRPSGSHNLVGWAEPSLSSKKKIKKLVDPRLGDDYSPKGAWATAELILKCLESDPRKRPSMEEVLVMLEKISSLKDRPKEPKSRARTPSRY 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29868026 29872220 + XM_039030541.1 Bhi04g01226 32835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01226 356 PIRSF TyrPK_CSF1-R 299 355 - -
Bhi04g01226 356 PIRSF TyrPK_CSF1-R 149 262 - -
Bhi04g01226 356 PIRSF TyrPK_CSF1-R 50 157 - -
Bhi04g01226 356 PANTHER OS01G0588500 PROTEIN-RELATED 29 350 - -
Bhi04g01226 356 CDD STKc_IRAK 58 336 - -
Bhi04g01226 356 Gene3D Transferase(Phosphotransferase) domain 1 139 352 - -
Bhi04g01226 356 Gene3D Phosphorylase Kinase; domain 1 23 138 - -
Bhi04g01226 356 MobiDBLite consensus disorder prediction 1 35 - -
Bhi04g01226 356 ProSiteProfiles Protein kinase domain profile. 52 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g01226 356 Pfam Protein tyrosine and serine/threonine kinase 56 331 IPR001245 GO:0004672|GO:0006468
Bhi04g01226 356 ProSitePatterns Protein kinases ATP-binding region signature. 58 91 IPR017441 GO:0005524
Bhi04g01226 356 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 29 350 - -
Bhi04g01226 356 SUPERFAMILY Protein kinase-like (PK-like) 29 334 IPR011009 -
Bhi04g01226 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01226 - - - csv:101216893 666.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01226 Bhi-Chr4:29868026 Bhi11g00249 Bhi-Chr11:5892232 1.92E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g93 . . . . . . . . Cmo05g00995 . . . . . . . . Bhi04g01226 . . . . . . Cla08g00941 . . . . . . . . . Cone20ag0022 . . . Cme03g01341 . . . . . . . . . . . . Cma05g00976 . . Cpe11g00786 . . . . . . . . . . . . . . . Lsi08g00786 . Chy03g00616 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004298 1 1 1 0 0 0 1 1 1 1 1 0 2 1 0 2 1 0 3 1 1 0 0 0 0 2 0 0 0 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87681 PF07714 PK_Tyr_Ser-Thr 1.60E-46 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01226 Bhi_Chr04 FPKM 13.506411 15.937832 19.419424 17.570299 26.57518 32.059357 30.627386 12.531668 12.277411 14.780273