Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01228 TGCGTTTCGCCTACTCAAAAACTTGTTCTTTATTATTGCTGGTGGTTTTTGCTTTGGGTTTTCATATTACTTCTAAATCACCAGCCATTTCTTGTCGATAAAAAGAGGTAAAAGAACAAAAACTAACCCCAAAAGAAGACACAAAAAACAACATCATGGTCGGCTTTAGAACCTTGTTTGTGTGTTTGCTGTTGTTTTTTGTGGTAGCAAATGCCGATGTCGATGAGGATGAATACTGGCGGACTCGTGCCACCGAAGCTCAAAAAGTGGCTCAAGATGCCTACAATCCGGACCCTGAAATTGTTACCGACAACTTGAATGCCGCTGTTAGCCGGGTAATGATCGGTCGCAACAGTACGAGAAGGAGTCTGAATTACAAGGGACCATGCTTGGCGACGAACCCTATCGACCGATGTTGGAGATGCAATCGAAATTGGGCCAGGAACCGAAAGAAGCTAGCGGAATGTCCATTGGGGTTTGGCCACAAAACCATCGGTGGAAAGAGAGGACCAATCTACGTCGTGACAGACGCATCCGACGATGACTTGATTAACCCTAAGCCTGGAACCTTGCGCTACGGCGTGATCCAAAAAGGCCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTATCTCAAGAGCTAATGATCTCAAGTGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCGTACGGTGCTGGCCTCACCATTCAATTCGTTAACAATGTGATCATCCATAACCTTCACATCCACGACATCGTCTCAAAATCAGGTGGAATGATTAGAGATTCTGTGGATCATTACGGGTTCAGAACACAAAGCGATGGGGATGGCATCTCCATCTTTGGCTCTAGTCATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTCATTGACGCTATTATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAACGAGGTGATGTTGTTCGGAGCGAGCGATAGCTACGCAGAAGACGCGATTATGCAAATAACGCTTGCATTCAACCACTTCGGGAGGGGATTGGTGCAAAGGATGCCAAGATGCAGGTGGGGTTTCTTCCATGTTGTTAACAATCACTACACCCATTGGCTTATGTATGCGATTGGCGGTAGCCAACATCCTACCATTGTTAGCCAAGGCAACCGTTTCATTGCTCCTCCAAACCCCAATGCCAAACTGGTAACAAAGAGAGAATATGCTATGGAGAGTGAATGGAAGAAATGGTCATGGAGATCCGAAGGAGATGCGCTGGTGAATGGAGCAGTGTTTATTCCATCAGGAGATCAAACCAAAGGAAAGAGGAAAGGCTTATCGAGATATGATATGATTTCTTTCAAGCCGGGAACCTACGTCCGTAGACTTGTACGTTTCGCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAGCATTTTTTTTTTTCTTTCACTTCTGTTATTTTTCTGTTCTTTTTTTCTTTTGTTACAATTAATTTCTTTTAGAGATAAAAAACTACAGAATTTTGAAAGGCTTTTATTTTAGCCTCTTTCCAGTCCAGTCTCGCCATTCACCTCAGTCTTTTAGGAAAGAAGGAAGACAAAATCTTTTGCCTTGTCAAGTCCTCTCTCTTTGTGTTTTCCTTT 1670 44.55 MVGFRTLFVCLLLFFVVANADVDEDEYWRTRATEAQKVAQDAYNPDPEIVTDNLNAAVSRVMIGRNSTRRSLNYKGPCLATNPIDRCWRCNRNWARNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIVSKSGGMIRDSVDHYGFRTQSDGDGISIFGSSHVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAEDAIMQITLAFNHFGRGLVQRMPRCRWGFFHVVNNHYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKLVTKREYAMESEWKKWSWRSEGDALVNGAVFIPSGDQTKGKRKGLSRYDMISFKPGTYVRRLVRFAGTLACAPRKPC 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30098174 30100135 + XM_039030387.1 Bhi04g01228 32837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01228 433 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570
Bhi04g01228 433 Pfam Pectate lyase 166 347 IPR002022 -
Bhi04g01228 433 PANTHER PECTATE LYASE 6 433 - -
Bhi04g01228 433 SUPERFAMILY Pectin lyase-like 82 424 IPR011050 -
Bhi04g01228 433 Gene3D - 81 426 IPR012334 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 104 121 IPR018082 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 128 153 IPR018082 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 164 180 IPR018082 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 228 249 IPR018082 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 330 349 IPR018082 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 372 396 IPR018082 -
Bhi04g01228 433 PRINTS Pollen allergen Amb family signature 404 427 IPR018082 -
Bhi04g01228 433 SMART amb_all 156 353 IPR002022 -
Bhi04g01228 433 PANTHER PECTATE LYASE 18-RELATED 6 433 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01228 Bhi-Chr4:30098174 Bhi11g03023 Bhi-Chr11:82254620 0 dispersed
Bhi04g01228 Bhi-Chr4:30098174 Bhi07g01600 Bhi-Chr7:45519784 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01228 K01728 - csv:101217922 792.341