Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01236 GGATAGGATAGGATCGAACGAACCCCAAATCGAGGATATGTGATTCGGTTTTTTCAGTGGTGTCAGAGCGAACCGGATGGCCCACTCTATTCCCCACCCGGTTCGTCCTTTTGGGGATCCACGCCGGACCTTTTTCCGTCACCGTCAGGGCATTCTCGACCTTTTACCCATCCCTTACTGCCACTGCCAAGTTGCAACTTCGAATCTACGCCTCCCTTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCCTCACTCTTCCCTCTCTTTGCTCCTCTGATTCACCGGCACCGCCCTTGCTCCACCGGGAAATCCTTTTGCTTTGGGTTGGAAAAACATGTCTTCCTCAAGACCTAGCCAGTCTTCTAGCAACTCGGGGCGGTCAAGACATAGCACCAGAATTATTGCTCAAACATCTGTTGATGCAAAGCTCCAAGCTGATTTTGAGGTATCTGGGAATTCATTCGACTACTCAAGTTCAGTGCGTGTCTCTAGTGATGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTCAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACAGATGTAAGGACTATTTTCACTGCACCTAGTGCTTCCTCACTGTTGAAAGCCTTGGGCTTTGCGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGTAAGACTTCTGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTCACAGCAGCTGGAGCCCTACAATCATATAAACTTGCCGCCAAAGCAATTACTAGGTTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCATGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCGGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAAAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAAAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCTCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATAGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTAGTAGTGTGTCATAATACAAGTCCCAGGTTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCTATTCACGTGAACAAGGAATTGGAGTTGGAGAATCAAATTATAGAGAAAAATATTCTACGTACACAGACACTCTTATGCGACATGCTAATGCGTGATGCTCCTTTAGGTATTGTATCAAGGAGTCCTAACATAATGGATCTCGTCAAATCTGATGGGGCGGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGCGACTTCCAGTTGCGGGACATTGCCTCCTGGCTTGCCGAATATCATATGGATTCAACAGGGATAAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTGTGTGGGATGGCTGCTGTGAGGATAACTGCTAATGATATGATTTTTTGGTTTCGATCTCATACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAAACAAGAAGTTTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTGATCCTTAGAAATACTTTTAAAGATACAGATACAGATGACATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAGATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCGATTTTAGCAGTTGACGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTCCCTGTGGATAAAGCTATTGGCAAGCATTTTCTTTCGTTAGTGGAAGATACTTCTGTAGAAGTTGTCAAGAAGATGTTGTTTTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTCCTCATATTGAGGTTGGCTCCATCAGGCTTGTTGTAAATGCTTGTGCAAGTAGGGACTTGCGTGAAAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGTTGGTTATGGACAAATTCACTCGATTAGAAGGCGATTACAAAGCTATTGTACAAAATCCCAACCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGAAAAAATTAACTGGGTGGTCACGTGAAGAAGTCATTGATAAGATGCTTTTGGGTGAGGTTTTTGGCACTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTTGTTTTGAACAATGCCATGAGTGGTCAAGATCCTGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAACGGAATGTATGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAAGGATGGGGTCGTTACAGGAGTTTTTTGCTTTTTGCAGCTTGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGGTTATGTGAGCAGACTGCATTGAAGAGATTGAAAGCATTGGGATACATAAAAAGACAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGCACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGTGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCTGACCTTGATAAAATTATTGATGGGTTCATTGATTTGGAAATGGTGGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTTAATGAGACTGTAGAAGATGCCATGTCCGAGATCATATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTAGTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACTATTTCAACCAACTTGACCAAGGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTGGAATTCAGGATAACATATGCTGGAGGCGGTATACCTGAATCGTTGCTGAACGAGATGTTTGGTAGTGAGGAGGACGCTTCTGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGGGAAGCAGGTAAGTCGAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACATAAGGCAAGTACGTAGGCAAAAGGAGAAGAACGGACCATTTCAGACATCAACCGAGTAAAAGATTGCATTCTATGTTGAAGTTGAATTTCGGGGATTTGCAGTGAGTGATGATTTTGTATAGTACTAAGTTGTTTCTCTCATTGTCAAATTTCAATCTCCTTTGAACTTTTGTTGAAATACAATCTAATTTACTCATAAGTTGATTTTGACTCTTTTATTTCAAGCTTA 3936 41.77 MSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEVSGNSFDYSSSVRVSSDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASSLLKALGFAEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLAEYHMDSTGISTDSLYDAGYPGALALGDEVCGMAAVRITANDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTDDINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHFLSLVEDTSVEVVKKMLFLALQGQEEQNVQFEIKTHGPHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKLVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMKKLTGWSREEVIDKMLLGEVFGTHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLKALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETVEDAMSEIIYGDSLRLQQVLADFLVLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKAST 1123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30667267 30673931 - XM_039030802.1 Bhi04g01236 32845

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01236 1123 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1119 - -
Bhi04g01236 1123 PANTHER PHYTOCHROME A 1 1119 - -
Bhi04g01236 1123 PIRSF Phytochrome_conventional 1 1123 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bhi04g01236 1123 SMART pas_2 748 817 IPR000014 -
Bhi04g01236 1123 SMART pas_2 618 684 IPR000014 -
Bhi04g01236 1123 SUPERFAMILY GAF domain-like 408 585 - -
Bhi04g01236 1123 Pfam PAS fold 619 733 IPR013767 GO:0006355
Bhi04g01236 1123 Pfam PAS fold 749 871 IPR013767 GO:0006355
Bhi04g01236 1123 Gene3D - 405 578 IPR043150 -
Bhi04g01236 1123 TIGRFAM sensory_box: PAS domain S-box protein 623 737 IPR000014 -
Bhi04g01236 1123 CDD HATPase_Phy-like 1004 1115 IPR044767 -
Bhi04g01236 1123 Pfam PAS fold 69 185 IPR013654 GO:0006355
Bhi04g01236 1123 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Bhi04g01236 1123 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Bhi04g01236 1123 Gene3D PAS domain 611 748 - -
Bhi04g01236 1123 Pfam Phytochrome region 413 587 IPR013515 GO:0006355|GO:0009584
Bhi04g01236 1123 Gene3D - 956 1121 IPR036890 -
Bhi04g01236 1123 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1005 1115 IPR003594 -
Bhi04g01236 1123 Gene3D - 199 561 IPR029016 -
Bhi04g01236 1123 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1112 IPR036890 -
Bhi04g01236 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Bhi04g01236 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Bhi04g01236 1123 SMART HisKA_10 893 957 IPR003661 GO:0000155|GO:0007165
Bhi04g01236 1123 Pfam GAF domain 221 400 IPR003018 GO:0005515
Bhi04g01236 1123 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Bhi04g01236 1123 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Bhi04g01236 1123 SMART gaf_1 218 410 IPR003018 GO:0005515
Bhi04g01236 1123 ProSiteProfiles Histidine kinase domain profile. 900 1119 IPR005467 -
Bhi04g01236 1123 MobiDBLite consensus disorder prediction 1 24 - -
Bhi04g01236 1123 Gene3D PAS domain 763 877 - -
Bhi04g01236 1123 Gene3D PAS domain 74 321 - -
Bhi04g01236 1123 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Bhi04g01236 1123 Coils Coil 397 417 - -
Bhi04g01236 1123 CDD PAS 627 733 IPR000014 -
Bhi04g01236 1123 CDD PAS 760 871 IPR000014 -
Bhi04g01236 1123 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Bhi04g01236 1123 SUPERFAMILY GAF domain-like 198 397 - -
Bhi04g01236 1123 SMART HKATPase_4 1005 1117 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01236 K12120 PHYA; phytochrome A - csv:101208491 2134.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01236 Bhi-Chr4:30667267 Bhi05g01474 Bhi-Chr5:50967161 0 dispersed
Bhi04g01236 Bhi-Chr4:30667267 Bhi04g01239 Bhi-Chr4:30977413 0 proximal
Bhi04g01235 Bhi-Chr4:30667267 Bhi04g01236 Bhi-Chr4:30667267 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g00162 . 20 1005 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1352.0
Bhi12g00966 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00965 CCT 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00967 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00964 . 1 833 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1140.2
Bhi05g01444 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01443 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01445 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi12g02461 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi12g02460 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi10g01319 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01320 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01318 . 286 1241 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi09g03051 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi09g03050 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi04g01236 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01235 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01239 . 3 1141 Histidine Kinase Gene Family AT1G09570 71.8 0.0e+00 1642.1
Bhi05g01474 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi05g01475 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi01g01090 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.0
Bhi01g01090 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.6 0.0e+00 1667.9
Bhi08g02111 . 32 1056 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1233.0
Bhi04g01236 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi04g01235 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi05g01474 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi05g01475 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi04g01239 . 28 1075 Histidine Kinase Gene Family AT2G18790 51.4 8.2e-312 1067.4
Bhi05g01474 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi05g01475 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi01g01090 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1155.6
Bhi04g01236 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi04g01235 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi01g01090 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.4 0.0e+00 1711.4
Bhi08g02111 . 33 1117 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1278.5
Bhi04g01236 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi04g01235 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi05g01474 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi05g01475 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi04g01239 . 27 1136 Histidine Kinase Gene Family AT4G16250 50.4 0.0e+00 1091.3
Bhi08g02111 . 15 1118 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1354.0
Bhi01g01090 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01236 Bhi_Chr04 FPKM 46.266846 51.336815 46.644329 46.560535 2.067045 1.886081 2.273445 0.0 0.0 0.076279