Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01239 ATGTCATCAACAAGTAGACCAAGCCAGAGTTCCAGGAACACTGGAGGAGGATCTTCCTCCTCATCACAATCAAGACACAGCTCTAGAATCCTCACTCAAACCTCCATTGATGCAAAGCTTCATTCCCACTTTGAACAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACGGCCGCACCACCCACCACCACCATCGCATACCTCCAACACATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTCTTAGCCCTCCACCCCACCACCCTCAAACTCATCGCCTTCAGCCAGAATGCCCCTGAAATGCTCGCCACCGTCGCCCACACCGTACCCGATGGGGACAACCACCCCCTCCTTGCTATTGGTACCGACCTCCGAGCCATCTTCACTGCTCCCACCGCCACTGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTTACCCTCCTCAACCCCATTCTCGTCCACTCCAAGTCCTCAGGAAAGCCCTTTTACGCCATTCTCCATCGCGTCACCGGTAGCATTATCATTGACTTCGAACCCCTCAAACCCGACCAAGTCCCTGTCACGGCCGCAGGAGCTCTCCAGTCCTATAAGCTCGCAGCCAAAGCCATCACTCGTCTCCAAGCTCTCCCTAGTGGGAGCCTGGTTAGACTTTGTGACACCATGGTTCAAGAAGTATTTGAGTTGACAGGTTACGATAGAGTTATGACTTATAAGTTTCACGATGATGATCACGGAGAGGTTTTTTCCGAGGTTACGAAGCCTGGCCTTGAACCTTATCTAGGTTTACATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTGTTCATGAAGAACAAAGTTAGAATGATTGTGGATTGCAGAGCCAAGCATGTGAAAGTCATTCAAGATCACAACCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAAAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAAGATGAAGAGAACTTTGATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAGTATAAGAGGAAAAGGTTATGGGGTTTGGTGGTTTGTCATAACACAACTCCTAGATTTGTTCCTTTTCCTCTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTCTGGAGAAAAATATCCTGAGAACTCAAACACTTTTATGTGACATGTTAATGAGAGATGCTCCTTTAGGAATCGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGATATGGAGATTGGGGATAACCCCAACTGATTTTCATCTTCAGGATCTTGCTTCATGGATTTTCGAATATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTACGATGCTGGGTACCCCGGTGCACTGGCACTAGGTGATGCGGTGTGTGGGATGGCTGCTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTCCGATCGCACACTGCTTCGGAGATTCGGTGGGGCGGGGCGAAGCATGAGCCAGGTGAGAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGGAACACCTTTAAAGATACAGATGATCATATGAGCGAGATTCATAGAAAATCAATACAAACAACACTTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGATTGATTGAAACAGCCACTGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTGAGAAAGCTATTGGCAAGCATTTGCTCACATTAGTGGAAGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGGTCTTGGCATTGCAAGGTCAAGAGGAAAAAAACGTTCAATTCGAGATAAAAACACACAACTCAGACATCGAATCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTAAGTGAAAATGTGGTGGGAGTGTGCTTTGTAGCACAAGACATAACATGTCAAAAGATAGTAATGGACAAGTTCACAAAATTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAATCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAACTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTATTTGGAACACAATTAAACTCCAAATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTATTGAACAATGCAATGAGTGGGCAAGATACTGAAAAGAATATCTCATTTGGTTTTCATGCTAAAAATGGGATATTTGTTGAATGTCTATTATGTGTCAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCAAGTCAAGAGCTGCAACAAGCATTGAGTATTCAAAAACTATGTGAGAGGACTGCTTTGAATAGGTTGAAGGCACTGGGATATATGAAGAGGCAGATTCAAAATCCTCTTTGTGGGATTATTTTTTCAAGGAAAATGTTGCAGCAAACTCAATTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAAATCTCCAAGGTTCTTGATGAGTCTCATGATCTTGATCATATTATTCAAGGTTTAATTGAATTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTAGCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATTCAAATAGAAAATGAAGTTGCTGAAGAGATCATGACTGAGACCTTATATGGAGACAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTATGGTTTCAACAAATTTCACTAAGGCTCATTTAGGAAACTCAGTACATCTTGTGCATCTTGAATTCAGGATAACATATGTTGGAGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATGAGGATCCATCTGAAGAAGGTTTCAGCCTATTTATAAGTAGAAAATTGGTGAAGATGATGAATGGAGATGTGAGATATGTGAGGGAATTTGGGAAGTCAAGCTTCATCATAACTCTTGAACTTGCTGCTGCTCATAAGTTAAGAACCTAA 3435 41.69 MSSTSRPSQSSRNTGGGSSSSSQSRHSSRILTQTSIDAKLHSHFEQSGSSFDYSTSIHLTTNPTAAPPTTTIAYLQHIQKSNLIQPFGCLLALHPTTLKLIAFSQNAPEMLATVAHTVPDGDNHPLLAIGTDLRAIFTAPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSIIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLVRLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFDQNNNNNDASLQKYKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKIWRLGITPTDFHLQDLASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRISSEDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDDHMSEIHRKSIQTTLSDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVEKAIGKHLLTLVEDSSVEIVKKMLVLALQGQEEKNVQFEIKTHNSDIESGSISLIVNACASKDLSENVVGVCFVAQDITCQKIVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGTQLNSKSCCCHLKNQEAFVNLGIVLNNAMSGQDTEKNISFGFHAKNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDHIIQGLIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVAEEIMTETLYGDNLRLQQVMADFLLISVNYAPTGGQLMVSTNFTKAHLGNSVHLVHLEFRITYVGGGIPESLLNEMFGNDEDPSEEGFSLFISRKLVKMMNGDVRYVREFGKSSFIITLELAAAHKLRT 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30977413 30984507 + XM_039028497.1 Bhi04g01239 32848

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01239 1144 Gene3D PAS domain 77 325 - -
Bhi04g01239 1144 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 744 IPR035965 -
Bhi04g01239 1144 Pfam PAS fold 764 891 IPR013767 GO:0006355
Bhi04g01239 1144 Pfam PAS fold 634 748 IPR013767 GO:0006355
Bhi04g01239 1144 ProSiteProfiles PAS repeat profile. 764 816 IPR000014 -
Bhi04g01239 1144 SUPERFAMILY PYP-like sensor domain (PAS domain) 778 889 IPR035965 -
Bhi04g01239 1144 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1026 1136 IPR003594 -
Bhi04g01239 1144 Gene3D - 203 573 IPR029016 -
Bhi04g01239 1144 SMART HKATPase_4 1026 1138 IPR003594 -
Bhi04g01239 1144 Pfam GAF domain 223 412 IPR003018 GO:0005515
Bhi04g01239 1144 Pfam Phytochrome region 425 599 IPR013515 GO:0006355|GO:0009584
Bhi04g01239 1144 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 222 402 IPR016132 -
Bhi04g01239 1144 PRINTS Phytochrome signature 137 159 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 237 256 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 322 343 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 442 462 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 527 546 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 560 578 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 634 650 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 653 668 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 726 743 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 746 766 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PANTHER PHYTOCHROME A 6 1139 - -
Bhi04g01239 1144 Coils Coil 409 429 - -
Bhi04g01239 1144 SMART gaf_1 222 422 IPR003018 GO:0005515
Bhi04g01239 1144 SUPERFAMILY GAF domain-like 420 598 - -
Bhi04g01239 1144 SUPERFAMILY GAF domain-like 202 409 - -
Bhi04g01239 1144 TIGRFAM sensory_box: PAS domain S-box protein 638 751 IPR000014 -
Bhi04g01239 1144 CDD PAS 775 891 IPR000014 -
Bhi04g01239 1144 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 192 IPR035965 -
Bhi04g01239 1144 ProSiteProfiles PAS repeat profile. 631 701 IPR000014 -
Bhi04g01239 1144 SMART pas_2 763 834 IPR000014 -
Bhi04g01239 1144 SMART pas_2 633 699 IPR000014 -
Bhi04g01239 1144 ProSitePatterns Phytochrome chromophore attachment site signature. 322 331 IPR013516 -
Bhi04g01239 1144 PIRSF Phytochrome_conventional 6 1144 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bhi04g01239 1144 Gene3D PAS domain 626 762 - -
Bhi04g01239 1144 CDD PAS 642 748 IPR000014 -
Bhi04g01239 1144 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 971 1135 IPR036890 -
Bhi04g01239 1144 Gene3D - 417 590 IPR043150 -
Bhi04g01239 1144 ProSiteProfiles Histidine kinase domain profile. 920 1138 IPR005467 -
Bhi04g01239 1144 Pfam PAS fold 73 188 IPR013654 GO:0006355
Bhi04g01239 1144 Gene3D - 957 1132 IPR036890 -
Bhi04g01239 1144 PANTHER TWO-COMPONENT HISTIDINE KINASE 6 1139 - -
Bhi04g01239 1144 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01239 K12120 PHYA; phytochrome A - csv:101219585 2049.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01235 Bhi-Chr4:30667267 Bhi04g01239 Bhi-Chr4:30977413 0 dispersed
Bhi04g01239 Bhi-Chr4:30977413 Bhi05g01474 Bhi-Chr5:50967161 0 dispersed
Bhi04g01236 Bhi-Chr4:30667267 Bhi04g01239 Bhi-Chr4:30977413 0 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g00162 . 20 1005 Histidine Kinase Gene Family AT2G01830 71.9 0.0e+00 1352.0
Bhi12g00966 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00965 CCT 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00967 . 23 986 Histidine Kinase Gene Family AT2G01830 72.4 0.0e+00 1334.7
Bhi12g00964 . 1 833 Histidine Kinase Gene Family AT2G01830 72.2 0.0e+00 1140.2
Bhi05g01444 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01443 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi05g01445 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.2 7.7e-280 961.1
Bhi12g02461 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi12g02460 . 58 1003 Histidine Kinase Gene Family AT2G01830 53.6 1.2e-272 937.2
Bhi10g01319 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01320 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi10g01318 . 286 1241 Histidine Kinase Gene Family AT2G01830 52.0 1.2e-269 927.2
Bhi09g03051 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi09g03050 . 1 989 Histidine Kinase Gene Family AT5G10720 57.6 1.7e-294 1009.6
Bhi04g01236 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01235 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.6 0.0e+00 1825.1
Bhi04g01239 . 3 1141 Histidine Kinase Gene Family AT1G09570 71.8 0.0e+00 1642.1
Bhi05g01474 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi05g01475 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.0 0.0e+00 1211.4
Bhi01g01090 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.5 0.0e+00 1198.0
Bhi01g01090 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.6 0.0e+00 1667.9
Bhi08g02111 . 32 1056 Histidine Kinase Gene Family AT2G18790 59.6 0.0e+00 1233.0
Bhi04g01236 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi04g01235 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1088.6
Bhi05g01474 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi05g01475 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.6 0.0e+00 1085.1
Bhi04g01239 . 28 1075 Histidine Kinase Gene Family AT2G18790 51.4 8.2e-312 1067.4
Bhi05g01474 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi05g01475 . 12 1114 Histidine Kinase Gene Family AT5G35840 62.0 0.0e+00 1378.2
Bhi01g01090 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1155.6
Bhi04g01236 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi04g01235 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.5 0.0e+00 1112.4
Bhi01g01090 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.4 0.0e+00 1711.4
Bhi08g02111 . 33 1117 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1278.5
Bhi04g01236 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi04g01235 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.4 0.0e+00 1134.0
Bhi05g01474 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi05g01475 . 26 1113 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Bhi04g01239 . 27 1136 Histidine Kinase Gene Family AT4G16250 50.4 0.0e+00 1091.3
Bhi08g02111 . 15 1118 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1354.0
Bhi01g01090 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1269.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01239 Bhi_Chr04 FPKM 12.779396 15.694267 14.07624 12.788465 12.908321 13.013298 11.22423 23.676804 24.452328 24.099197