Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01239 ATGTCATCAACAAGTAGACCAAGCCAGAGTTCCAGGAACACTGGAGGAGGATCTTCCTCCTCATCACAATCAAGACACAGCTCTAGAATCCTCACTCAAACCTCCATTGATGCAAAGCTTCATTCCCACTTTGAACAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCCAACGGCCGCACCACCCACCACCACCATCGCATACCTCCAACACATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTCTTAGCCCTCCACCCCACCACCCTCAAACTCATCGCCTTCAGCCAGAATGCCCCTGAAATGCTCGCCACCGTCGCCCACACCGTACCCGATGGGGACAACCACCCCCTCCTTGCTATTGGTACCGACCTCCGAGCCATCTTCACTGCTCCCACCGCCACTGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTTACCCTCCTCAACCCCATTCTCGTCCACTCCAAGTCCTCAGGAAAGCCCTTTTACGCCATTCTCCATCGCGTCACCGGTAGCATTATCATTGACTTCGAACCCCTCAAACCCGACCAAGTCCCTGTCACGGCCGCAGGAGCTCTCCAGTCCTATAAGCTCGCAGCCAAAGCCATCACTCGTCTCCAAGCTCTCCCTAGTGGGAGCCTGGTTAGACTTTGTGACACCATGGTTCAAGAAGTATTTGAGTTGACAGGTTACGATAGAGTTATGACTTATAAGTTTCACGATGATGATCACGGAGAGGTTTTTTCCGAGGTTACGAAGCCTGGCCTTGAACCTTATCTAGGTTTACATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTGTTCATGAAGAACAAAGTTAGAATGATTGTGGATTGCAGAGCCAAGCATGTGAAAGTCATTCAAGATCACAACCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAAAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAAGATGAAGAGAACTTTGATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAGTATAAGAGGAAAAGGTTATGGGGTTTGGTGGTTTGTCATAACACAACTCCTAGATTTGTTCCTTTTCCTCTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCAAATTCTGGAGAAAAATATCCTGAGAACTCAAACACTTTTATGTGACATGTTAATGAGAGATGCTCCTTTAGGAATCGTGTCAAGGACTCCTAATATAATGGATCTTGTCAAATCTGATGGAGCTGCATTATTGTACAATAACAAGATATGGAGATTGGGGATAACCCCAACTGATTTTCATCTTCAGGATCTTGCTTCATGGATTTTCGAATATCATATGGATTCCACTGGTTTGAGTACTGATAGCTTGTACGATGCTGGGTACCCCGGTGCACTGGCACTAGGTGATGCGGTGTGTGGGATGGCTGCTGTGAGGATATCTTCCGAGGACATGATTTTCTGGTTCCGATCGCACACTGCTTCGGAGATTCGGTGGGGCGGGGCGAAGCATGAGCCAGGTGAGAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTTAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGGAACACCTTTAAAGATACAGATGATCATATGAGCGAGATTCATAGAAAATCAATACAAACAACACTTAGTGACCTCAAGATTATTGATGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTTAGATTGATTGAAACAGCCACTGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTGAGAAAGCTATTGGCAAGCATTTGCTCACATTAGTGGAAGATTCTTCTGTTGAAATTGTCAAGAAGATGTTGGTCTTGGCATTGCAAGGTCAAGAGGAAAAAAACGTTCAATTCGAGATAAAAACACACAACTCAGACATCGAATCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTAAGTGAAAATGTGGTGGGAGTGTGCTTTGTAGCACAAGACATAACATGTCAAAAGATAGTAATGGACAAGTTCACAAAATTACAAGGTGATTACAAAGCCATAGTACAAAACCCTAATCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAACTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAAATGCTTTTAGGAGAAGTATTTGGAACACAATTAAACTCCAAATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTATTGAACAATGCAATGAGTGGGCAAGATACTGAAAAGAATATCTCATTTGGTTTTCATGCTAAAAATGGGATATTTGTTGAATGTCTATTATGTGTCAATAAGATATTGGATAAAGATGGTGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCAAGTCAAGAGCTGCAACAAGCATTGAGTATTCAAAAACTATGTGAGAGGACTGCTTTGAATAGGTTGAAGGCACTGGGATATATGAAGAGGCAGATTCAAAATCCTCTTTGTGGGATTATTTTTTCAAGGAAAATGTTGCAGCAAACTCAATTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAAATCTCCAAGGTTCTTGATGAGTCTCATGATCTTGATCATATTATTCAAGGTTTAATTGAATTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTAGCAATTAGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATTCAAATAGAAAATGAAGTTGCTGAAGAGATCATGACTGAGACCTTATATGGAGACAATTTGAGACTTCAACAAGTCATGGCTGATTTCTTGTTGATATCAGTTAATTATGCACCAACAGGAGGCCAACTTATGGTTTCAACAAATTTCACTAAGGCTCATTTAGGAAACTCAGTACATCTTGTGCATCTTGAATTCAGGATAACATATGTTGGAGGAGGCATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATGAGGATCCATCTGAAGAAGGTTTCAGCCTATTTATAAGTAGAAAATTGGTGAAGATGATGAATGGAGATGTGAGATATGTGAGGGAATTTGGGAAGTCAAGCTTCATCATAACTCTTGAACTTGCTGCTGCTCATAAGTTAAGAACCTAA 3435 41.69 MSSTSRPSQSSRNTGGGSSSSSQSRHSSRILTQTSIDAKLHSHFEQSGSSFDYSTSIHLTTNPTAAPPTTTIAYLQHIQKSNLIQPFGCLLALHPTTLKLIAFSQNAPEMLATVAHTVPDGDNHPLLAIGTDLRAIFTAPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSIIIDFEPLKPDQVPVTAAGALQSYKLAAKAITRLQALPSGSLVRLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFDQNNNNNDASLQKYKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQILEKNILRTQTLLCDMLMRDAPLGIVSRTPNIMDLVKSDGAALLYNNKIWRLGITPTDFHLQDLASWIFEYHMDSTGLSTDSLYDAGYPGALALGDAVCGMAAVRISSEDMIFWFRSHTASEIRWGGAKHEPGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDDHMSEIHRKSIQTTLSDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVEKAIGKHLLTLVEDSSVEIVKKMLVLALQGQEEKNVQFEIKTHNSDIESGSISLIVNACASKDLSENVVGVCFVAQDITCQKIVMDKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKMLLGEVFGTQLNSKSCCCHLKNQEAFVNLGIVLNNAMSGQDTEKNISFGFHAKNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIQNPLCGIIFSRKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDHIIQGLIELEMVEFSLYEVLVVAISQVMMKSKGKGIQIENEVAEEIMTETLYGDNLRLQQVMADFLLISVNYAPTGGQLMVSTNFTKAHLGNSVHLVHLEFRITYVGGGIPESLLNEMFGNDEDPSEEGFSLFISRKLVKMMNGDVRYVREFGKSSFIITLELAAAHKLRT 1144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30977413 30984507 + XM_039028497.1 Bhi04g01239 32848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01239 1144 Gene3D PAS domain 77 325 - -
Bhi04g01239 1144 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 744 IPR035965 -
Bhi04g01239 1144 Pfam PAS fold 764 891 IPR013767 GO:0006355
Bhi04g01239 1144 Pfam PAS fold 634 748 IPR013767 GO:0006355
Bhi04g01239 1144 ProSiteProfiles PAS repeat profile. 764 816 IPR000014 -
Bhi04g01239 1144 SUPERFAMILY PYP-like sensor domain (PAS domain) 778 889 IPR035965 -
Bhi04g01239 1144 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1026 1136 IPR003594 -
Bhi04g01239 1144 Gene3D - 203 573 IPR029016 -
Bhi04g01239 1144 SMART HKATPase_4 1026 1138 IPR003594 -
Bhi04g01239 1144 Pfam GAF domain 223 412 IPR003018 GO:0005515
Bhi04g01239 1144 Pfam Phytochrome region 425 599 IPR013515 GO:0006355|GO:0009584
Bhi04g01239 1144 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 222 402 IPR016132 -
Bhi04g01239 1144 PRINTS Phytochrome signature 137 159 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 237 256 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 322 343 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 442 462 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 527 546 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 560 578 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 634 650 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 653 668 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 726 743 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PRINTS Phytochrome signature 746 766 IPR001294 GO:0006355|GO:0009584
Bhi04g01239 1144 PANTHER PHYTOCHROME A 6 1139 - -
Bhi04g01239 1144 Coils Coil 409 429 - -
Bhi04g01239 1144 SMART gaf_1 222 422 IPR003018 GO:0005515
Bhi04g01239 1144 SUPERFAMILY GAF domain-like 420 598 - -
Bhi04g01239 1144 SUPERFAMILY GAF domain-like 202 409 - -
Bhi04g01239 1144 TIGRFAM sensory_box: PAS domain S-box protein 638 751 IPR000014 -
Bhi04g01239 1144 CDD PAS 775 891 IPR000014 -
Bhi04g01239 1144 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 192 IPR035965 -
Bhi04g01239 1144 ProSiteProfiles PAS repeat profile. 631 701 IPR000014 -
Bhi04g01239 1144 SMART pas_2 763 834 IPR000014 -
Bhi04g01239 1144 SMART pas_2 633 699 IPR000014 -
Bhi04g01239 1144 ProSitePatterns Phytochrome chromophore attachment site signature. 322 331 IPR013516 -
Bhi04g01239 1144 PIRSF Phytochrome_conventional 6 1144 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Bhi04g01239 1144 Gene3D PAS domain 626 762 - -
Bhi04g01239 1144 CDD PAS 642 748 IPR000014 -
Bhi04g01239 1144 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 971 1135 IPR036890 -
Bhi04g01239 1144 Gene3D - 417 590 IPR043150 -
Bhi04g01239 1144 ProSiteProfiles Histidine kinase domain profile. 920 1138 IPR005467 -
Bhi04g01239 1144 Pfam PAS fold 73 188 IPR013654 GO:0006355
Bhi04g01239 1144 Gene3D - 957 1132 IPR036890 -
Bhi04g01239 1144 PANTHER TWO-COMPONENT HISTIDINE KINASE 6 1139 - -
Bhi04g01239 1144 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01235 Bhi-Chr4:30667267 Bhi04g01239 Bhi-Chr4:30977413 0 dispersed
Bhi04g01239 Bhi-Chr4:30977413 Bhi05g01474 Bhi-Chr5:50967161 0 dispersed
Bhi04g01236 Bhi-Chr4:30667267 Bhi04g01239 Bhi-Chr4:30977413 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01239 K12120 - csv:101219585 2049.63