Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01268 GGAAATAAACTTTGTAGGGCGCGGGCCACGGGTTTGGACTTTGGAGTTCGACTCTAATCTAACTCCTGCCGGTTCTCTCTCTAATCCTCACCGCGATAGAATAGCCGCGAAGACAAAGCCCAAACGATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCCTCATTTAACCCCGAACTCTTGCCGGAAAGTCTTTCTAACGGCAGACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTTACTCTCAAACCTTCTCCGAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGCCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCAGAGTAGCTGCTGCTGCATTGCCACCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCCGAGTTTACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTCTTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGTGAGTCTTGTGAATTCTTTCACGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGTGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTGTCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCATCCGAGTAAATAATGCCAATCCCAGATATGGGGGCGACTTTGAATGGAACAGATAGTCTACTTTTTCTTAGGCCGAAGATGATCGTTGTGCTTATTTCAGTTATCCATATCAAACTAGTTATGAGCTAATCACCTTTTTAATATGGGTCCACGTTTTTTTAATATATCTCTAAACCCTAGAATATATATATAATTTTGTATATTAGTTTTAAATGTTATTGTGGAAGTTACCAATAGAGTTCACTTTCATTCCAA 1141 44.52 MLRLQWLSSSLLPSFNPELLPESLSNGRLCSLNSFRPLLTLKPSPKCQYSWNTQQQQQQSPFEPGSQTDSFSSQTRARVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFVLPHLMGWHTIANTITRPEDSIRVNNANPRYGGDFEWNR 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32421701 32424959 + XM_039028382.1 Bhi04g01268 32877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01268 271 Pfam Whirly transcription factor 94 228 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bhi04g01268 271 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 45 271 - -
Bhi04g01268 271 SUPERFAMILY ssDNA-binding transcriptional regulator domain 86 271 IPR009044 GO:0003677|GO:0006355
Bhi04g01268 271 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 45 271 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bhi04g01268 271 MobiDBLite consensus disorder prediction 50 70 - -
Bhi04g01268 271 Gene3D Transcriptional Coactivator Pc4; Chain A 79 251 IPR009044 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01268 - - - csv:101203474 462.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01268 Bhi-Chr4:32421701 Bhi06g00113 Bhi-Chr6:3140253 1.02E-50 dispersed
Bhi04g01268 Bhi-Chr4:32421701 Bhi04g01269 Bhi-Chr4:32421702 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g01269 . 21 270 Whirly Transcription Factor Family AT1G14410 66.4 8.8e-92 334.3
Bhi04g01268 . 21 271 Whirly Transcription Factor Family AT1G14410 66.1 1.2e-91 334.0
Bhi06g00113 . 56 214 Whirly Transcription Factor Family AT1G71260 66.0 1.1e-56 217.6
Bhi04g01269 . 5 270 Whirly Transcription Factor Family AT2G02740 62.8 5.3e-92 335.1
Bhi04g01268 . 5 271 Whirly Transcription Factor Family AT2G02740 62.5 6.9e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
954 PF08536 Whirly 8.90E-61 CL0609 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01268 Bhi_Chr04 FPKM 2.781073 5.457043 0.40966 0.326743 1.084948 0.64891 0.959426 0.0 0.277704 0.481131