Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01269 GAAATAAACTTTGTAGGGCGCGGGCCACGGGTTTGGACTTTGGAGTTCGACTCTAATCTAACTCCTGCCGGTTCTCTCTCTAATCCTCACCGCGATAGAATAGCCGCGAAGACAAAGCCCAAACGATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCCTCATTTAACCCCGAACTCTTGCCGGAAAGTCTTTCTAACGGCAGACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTTACTCTCAAACCTTCTCCGAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGCCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCAGAGCTGCTGCTGCATTGCCACCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCCGAGTTTACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTCTTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGTGAGTCTTGTGAATTCTTTCACGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGTGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTGTCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCATCCGAGTAAATAATGCCAATCCCAGATATGGGGGCGACTTTGAATGGAACAGATAGTCTACTTTTTCTTAGGCCGAAGATGATCGTTGTGCTTATTTCAGTTATCCATATCAAACTAGTTATGAGCTAATCACCTTTTTAATATGGGTCCACGTTTTTTTAATATATCTCTAAACCCTAGAATATATATATAATTTTGTATATTAGTTTTAAATGTTATTGTGGAAGTTACCAATAGAGTTCACTTTCATTCCAA 1137 44.5 MLRLQWLSSSLLPSFNPELLPESLSNGRLCSLNSFRPLLTLKPSPKCQYSWNTQQQQQQSPFEPGSQTDSFSSQTRARAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFVLPHLMGWHTIANTITRPEDSIRVNNANPRYGGDFEWNR 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32421702 32424959 + XM_039028383.1 Bhi04g01269 32878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01269 270 SUPERFAMILY ssDNA-binding transcriptional regulator domain 85 270 IPR009044 GO:0003677|GO:0006355
Bhi04g01269 270 Gene3D Transcriptional Coactivator Pc4; Chain A 78 250 IPR009044 GO:0003677|GO:0006355
Bhi04g01269 270 MobiDBLite consensus disorder prediction 50 75 - -
Bhi04g01269 270 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 46 270 - -
Bhi04g01269 270 Pfam Whirly transcription factor 93 227 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bhi04g01269 270 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 46 270 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01269 - - - csv:101203474 461.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01269 Bhi-Chr4:32421702 Bhi06g00113 Bhi-Chr6:3140253 5.31E-50 dispersed
Bhi04g01268 Bhi-Chr4:32421701 Bhi04g01269 Bhi-Chr4:32421702 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g01269 . 21 270 Whirly Transcription Factor Family AT1G14410 66.4 8.8e-92 334.3
Bhi04g01268 . 21 271 Whirly Transcription Factor Family AT1G14410 66.1 1.2e-91 334.0
Bhi06g00113 . 56 214 Whirly Transcription Factor Family AT1G71260 66.0 1.1e-56 217.6
Bhi04g01269 . 5 270 Whirly Transcription Factor Family AT2G02740 62.8 5.3e-92 335.1
Bhi04g01268 . 5 271 Whirly Transcription Factor Family AT2G02740 62.5 6.9e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
955 PF08536 Whirly 8.80E-61 CL0609 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01269 Bhi_Chr04 FPKM 3.329221 4.076642 3.545984 3.226282 8.8712 7.66336 8.03643 2.318773 1.678632 2.115543