Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01269 GAAATAAACTTTGTAGGGCGCGGGCCACGGGTTTGGACTTTGGAGTTCGACTCTAATCTAACTCCTGCCGGTTCTCTCTCTAATCCTCACCGCGATAGAATAGCCGCGAAGACAAAGCCCAAACGATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTGCTTCCCTCATTTAACCCCGAACTCTTGCCGGAAAGTCTTTCTAACGGCAGACTGTGTAGCCTCAACTCCTTTCGCCCACTCCTTACTCTCAAACCTTCTCCGAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGTCGCCCTTCGAACCGGGCTCTCAGACCGATTCATTTTCCTCACAAACTCGCGCCAGAGCTGCTGCTGCATTGCCACCGAGGTTTTTTGTTGGTCATTCGATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCCGAGTTTACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTCTTCTCATTATCAGTGACAGAATTGGGAAGTCTAGTTGCCCTTGGCCCACGTGAGTCTTGTGAATTCTTTCACGACCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGTGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTGTCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCATCCGAGTAAATAATGCCAATCCCAGATATGGGGGCGACTTTGAATGGAACAGATAGTCTACTTTTTCTTAGGCCGAAGATGATCGTTGTGCTTATTTCAGTTATCCATATCAAACTAGTTATGAGCTAATCACCTTTTTAATATGGGTCCACGTTTTTTTAATATATCTCTAAACCCTAGAATATATATATAATTTTGTATATTAGTTTTAAATGTTATTGTGGAAGTTACCAATAGAGTTCACTTTCATTCCAA 1137 44.5 MLRLQWLSSSLLPSFNPELLPESLSNGRLCSLNSFRPLLTLKPSPKCQYSWNTQQQQQQSPFEPGSQTDSFSSQTRARAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFVLPHLMGWHTIANTITRPEDSIRVNNANPRYGGDFEWNR 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32421702 32424959 + XM_039028383.1 Bhi04g01269 32878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01269 270 SUPERFAMILY ssDNA-binding transcriptional regulator domain 85 270 IPR009044 GO:0003677|GO:0006355
Bhi04g01269 270 Gene3D Transcriptional Coactivator Pc4; Chain A 78 250 IPR009044 GO:0003677|GO:0006355
Bhi04g01269 270 MobiDBLite consensus disorder prediction 50 75 - -
Bhi04g01269 270 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 46 270 - -
Bhi04g01269 270 Pfam Whirly transcription factor 93 227 IPR013742 GO:0003697|GO:0006355|GO:0006952
Bhi04g01269 270 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 46 270 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01269 Bhi-Chr4:32421702 Bhi06g00113 Bhi-Chr6:3140253 5.31E-50 dispersed
Bhi04g01268 Bhi-Chr4:32421701 Bhi04g01269 Bhi-Chr4:32421702 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
955 PF08536 Whirly 8.80E-61 CL0609 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01269 - - csv:101203474 461.07