Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01378 AAATAAATAAAGAGAGAAAAAAAATCAGGAGAGAATATAAATAAATCTCTCAGTTTCTCACTGGCAATTAAAGTGAGGTCGGCGAAGGAGAAAGAGTTTTCAGGCGAGTGTTGGTGAAGGAGGAAGCACTTCATTTCTAGCTCTTTTCTCTCTTAATCAGGCTTGGGCACAGGAGCTTTTTGTCGTTCTTTAAGGATTTTTGGTTTTTTTCCCCTAATTTGTAATGTTTATCAGAGGGTGATTGATTACTGTTCATCTGGTTTGTTAAATTCATTTATCTGTGAGGATTTTGATTGAGAATCAATAAGGAAGGAAGAGTTGTTTCTGTAACTTGGAGGACTTTTTGGTTTCATTATGAATAGAGGAATGGATTCAGTGATTGATCCTATGATGAACCATGACAAGCATTTAGATTCTCAGCTATGGCATGCTTGTGCTGGTGGGCTGATTCAATTGCCTACCATTAACTCAAAGGTAGTCTACTTCCCCCAGGGCCATGCTGAGCATGCCCAGGGAAATGTCGATTTCGGTAATGCTCGAATTCCTTCAATCATTCCTTGCAGGGTATCTGCCATAAGACATATGGCAGATCCTGAAACTGATGAGATTTTTGCTAAGATAAAGTTGAATCCACTGGGGAACAATGAATTCAGTTTGGATAATGATGATGAGCTTCTAGGCCACAATGAAATTAGGAATCAGGAGAAACCTACCTCCTTTGCTAAGACATTGACACAATCTGATGCAAACAATGGTGGAGGATTCTCTGTGCCTCGTTATTGCGCTGAGACAATCTTTCCTCGGTTGGATTACTCGGTAGAACCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATATAGAGGAACTCCACGTCGCCATCTTTTGACAACTGGGTGGAGTAATTTTGTGAATCAGAAGAAACTTGTTGCTGGGGACTCGATTGTCTTCTTGAGGGCTGAAACTGGCGATCTTTGTATTGGAGTTAGACGAGCCAAGAGGGGAATTGGTTGTGGAATTGATTACTCATCTGGCTGGAACTCAACCAATTCAGGCTCTTCACTTGTGGGGTTTTCTGATTTTATGAGGGAGAGTGAAGGTAGATTGGTGAGGAGAAACTCAAATGGGAATCTGAGCGAGAGAGTGAAGGTAGAATCCATCATCGAAGCTGCAATGCTTGCGGCCAGTGGTAAACCCTTTGAGGTCGTGTACTACCCATGCGCTGGTACTCCAGAGTTTGTTGTTAAGGCCTCTGCTTTAAGATCTGCAATGCAAATTCACTGGTATTCTGCTATGAGATTCAAGATGCCTTTTGAAACCGAGGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTTGTATCCAAGCAGCCGATCCTGTTCAGTGGCCTGATTCTCCATGGCGAATGCTGCAGGTGACATGGGATGAGCCAGATTTACTGCAAAATGTGAAGAGTGTCAACCCATGGTTGGTTGAAGTGGTAGTAAATATGCCAGCTATCCATGTTTCCCCCTTCTCGCCACCGAGAAAGAAGCCACGTTTTCCACTTCCAGCAGATACTTCTGTATTTGGTCACCTTCCAATGCCATCGTTTTCCACCAATATCTTTGACACAACCAACCCCTTACAAAGTATTACACCTAACAAAATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCACCCAACCTCCAAACCAGCAAACCGCATTCGGGACAATTTCCCACTGGTTTTAAGCACCTTGATGATGCCACTCCTCTTCCTGGCATTCGAGGTGAAGGTATTTTTGGTGGCATGAGAAACCCTGATAATCATTCTCACTGGCTAACAATGGGAAATCATATCCAAAGCTCAAACGAAAGCTCAAAGGAAAGCTCGAAAGAAAGCAAAGAAACAAAACCAGCTCATATCATATTGTTTGGCCAACTCATTTTTCCTAACCAACAGAATTTTAACAGCTACTCTGGAGATACAACGAATGCATCAGATGCGAATCAAGAGAAAGCATCAAATCTTTCTGACGGTTCTGGTTTGTCATCGCAACAAAATGGTTCACTGGAGAATTCATCAGATGGAGGATCTACCTCGTACAACGGTCAGGACATAACCGGTCTTAGCTTGGAAACTGGTCATTGCAAAGTGTTTATGGAGTTTGAGAATGTTGGTCGTACTCTTGATCTATCGGCCCTCAGATCGTACGAAGAATTGTATAGAAAACTGGGCAATATGCTCGGTTTAAGAAGCTCAGAAATGCTGAATTCTGTTTGTTATCAGGATGCACTTGGCTTTACAAAGCATGTTGGAGAAGAGCCTTTCAGCGAGTTTCTGAAGAAAGCGCGAAAACTAACCATACTCACAGATTCTCGAAGTAGGGACAACATTAGACGACATTAGAGTGTAGGAGAAAATTGAACTGTGTTTTTATTGTACAGTTGAGTTATAAGTTCTGTTGTTTGTTGTTTCTTTCCACCCCTTCTTTTTCTCCTCTTGCCATTAGGGAAGCCTAATTTTTGATTAGTTGCAGTTTGATATGCAGCCAGCAGTTTTCCTTTGTTTACCCAGACAAGAACTGGGATTGTTTTTGAATTGTTGAAAACTCCAGAATTTCCTAGTAGTGATTCTCTTTTAGTAGTTACTCATA 2689 41.91 MNRGMDSVIDPMMNHDKHLDSQLWHACAGGLIQLPTINSKVVYFPQGHAEHAQGNVDFGNARIPSIIPCRVSAIRHMADPETDEIFAKIKLNPLGNNEFSLDNDDELLGHNEIRNQEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSVEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCIGVRRAKRGIGCGIDYSSGWNSTNSGSSLVGFSDFMRESEGRLVRRNSNGNLSERVKVESIIEAAMLAASGKPFEVVYYPCAGTPEFVVKASALRSAMQIHWYSAMRFKMPFETEDSSRISWFMGTISCIQAADPVQWPDSPWRMLQVTWDEPDLLQNVKSVNPWLVEVVVNMPAIHVSPFSPPRKKPRFPLPADTSVFGHLPMPSFSTNIFDTTNPLQSITPNKIPAGIQGARHTQFGLSSPNLQTSKPHSGQFPTGFKHLDDATPLPGIRGEGIFGGMRNPDNHSHWLTMGNHIQSSNESSKESSKESKETKPAHIILFGQLIFPNQQNFNSYSGDTTNASDANQEKASNLSDGSGLSSQQNGSLENSSDGGSTSYNGQDITGLSLETGHCKVFMEFENVGRTLDLSALRSYEELYRKLGNMLGLRSSEMLNSVCYQDALGFTKHVGEEPFSEFLKKARKLTILTDSRSRDNIRRH 695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 34597771 34601531 - XM_039030335.1 Bhi04g01378 32987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01378 695 MobiDBLite consensus disorder prediction 549 596 - -
Bhi04g01378 695 SUPERFAMILY DNA-binding pseudobarrel domain 110 224 IPR015300 -
Bhi04g01378 695 Gene3D - 605 690 - -
Bhi04g01378 695 CDD B3_DNA 121 222 IPR003340 GO:0003677
Bhi04g01378 695 SMART B3_2 122 224 IPR003340 GO:0003677
Bhi04g01378 695 Gene3D - 320 391 - -
Bhi04g01378 695 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Bhi04g01378 695 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bhi04g01378 695 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Bhi04g01378 695 ProSiteProfiles PB1 domain profile. 607 687 IPR000270 GO:0005515
Bhi04g01378 695 PANTHER AUXIN RESPONSE FACTOR 16 12 684 - -
Bhi04g01378 695 Gene3D - 120 224 IPR015300 -
Bhi04g01378 695 MobiDBLite consensus disorder prediction 504 518 - -
Bhi04g01378 695 MobiDBLite consensus disorder prediction 493 530 - -
Bhi04g01378 695 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01378 Bhi-Chr4:34597771 Bhi10g00538 Bhi-Chr10:11941991 0 dispersed
Bhi04g01378 Bhi-Chr4:34597771 Bhi04g01379 Bhi-Chr4:34597771 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
963 PF02362 B3 1.70E-20 CL0405 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01378 - - cmo:103496426 1246.11