Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01392 ATGTACGGACGCGCTCAACCGTTGACCACGGGCGACCAGATCGCCTCCGTCCCCGACTGCGGCGACAGTGGTGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTAACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGATGCCGTTTATGCTTCCACCGGTGATGGTTCGGACTTGGTTGTTCAGCGCAGCGATGGTTCAAGCCAGCTCACGCTTTCATTCCGTGGCCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAAAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGACAAAAAAGTTAGATACAGTGTCCGTCAGGAGGTTGCTCTAAGGATGCAACGCAACAAAGGACAATTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCACGGTAGTGTCTCAGAGTTAGGTCAACATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCAACCCCAATGATGCGGCGAGGACCGTCTGGGCCTAGATCACTTTGCAATGCTTGCGGACTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATACGGTGACTCCGGCTGAGCAGTGTGAAAGTGATGGTGCCAAGGACTTAGAGTGCAAACATGGTAACCATGCGCCCAGCAATATCGTATCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAGAATTACGCTTGTCAATACAGATAAAAAAAAGGCCATTGTGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGGTAATTTTACAACGTGGGTTGTAGAAGAATGTACAGATATAGCATTTGCCTTCTATTAAATACGAGAGAGATCATCTCCTCATTATGTCACCTTGAATACCCACCCCATTGTACTAACTGCTTTTTTTTTACCCCCTTAAAATTATGTCATTGTCCTCATGTGAGTGCGGGTTTGAACCTCTGATCTCTAAAAGAAAAATATATGTCAATTTTCACTGAGTAACTTTCA 1197 46.37 MYGRAQPLTTGDQIASVPDCGDSGEPLDNRLVRYGANSLEDGGGVGGMIEDLNPDAVYASTGDGSDLVVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQHESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHTVTPAEQCESDGAKDLECKHGNHAPSNIVSFSNGDNSALMAEH 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35094400 35102345 + XM_039029489.1 Bhi04g01392 33001

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01392 296 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Bhi04g01392 296 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 MobiDBLite consensus disorder prediction 171 204 - -
Bhi04g01392 296 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 Gene3D - 197 257 IPR013088 GO:0006355|GO:0008270
Bhi04g01392 296 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Bhi04g01392 296 MobiDBLite consensus disorder prediction 272 296 - -
Bhi04g01392 296 PANTHER GATA TRANSCRIPTION FACTOR 25 26 275 - -
Bhi04g01392 296 MobiDBLite consensus disorder prediction 127 146 - -
Bhi04g01392 296 PANTHER GATA TRANSCRIPTION FACTOR 28 26 275 IPR045280 GO:0006355
Bhi04g01392 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 251 - -
Bhi04g01392 296 SMART tify_2 71 106 IPR010399 -
Bhi04g01392 296 MobiDBLite consensus disorder prediction 1 22 - -
Bhi04g01392 296 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 Pfam tify domain 73 105 IPR010399 -
Bhi04g01392 296 Pfam CCT motif 138 180 IPR010402 GO:0005515
Bhi04g01392 296 MobiDBLite consensus disorder prediction 127 142 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01392 - - - csv:101214839 523.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01392 Bhi-Chr4:35094400 Bhi05g00918 Bhi-Chr5:32241302 1.05E-80 dispersed
Bhi04g01392 Bhi-Chr4:35094400 Bhi04g01394 Bhi-Chr4:35144633 1.18E-63 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi12g02239 . 1 180 Tify Gene Family AT4G14713 53.1 2.1e-46 183.3
Bhi12g02238 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02237 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02236 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02235 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
967 PF06203 CCT 7.40E-15 CL0281 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01392 Bhi_Chr04 FPKM 2.815981 2.329156 3.092883 2.125864 1.332935 2.121248 1.735059 0.0 0.16016 0.0