Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01392 ATGTACGGACGCGCTCAACCGTTGACCACGGGCGACCAGATCGCCTCCGTCCCCGACTGCGGCGACAGTGGTGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTAACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGATGCCGTTTATGCTTCCACCGGTGATGGTTCGGACTTGGTTGTTCAGCGCAGCGATGGTTCAAGCCAGCTCACGCTTTCATTCCGTGGCCAGGTTTATCTTTTCGACGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAATTATCTTCTGGTCAGCAAAGCGTGGATTTGGTAAATCAGAATCAAAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCTCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGACAAAAAAGTTAGATACAGTGTCCGTCAGGAGGTTGCTCTAAGGATGCAACGCAACAAAGGACAATTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGCCACGGTAGTGTCTCAGAGTTAGGTCAACATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCAATGGCAACCCCAATGATGCGGCGAGGACCGTCTGGGCCTAGATCACTTTGCAATGCTTGCGGACTCTTTTGGGCAAACAGGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAGGACCATACGGTGACTCCGGCTGAGCAGTGTGAAAGTGATGGTGCCAAGGACTTAGAGTGCAAACATGGTAACCATGCGCCCAGCAATATCGTATCTTTCTCAAACGGTGATAACTCTGCTTTAATGGCTGAGCATTAGAATTACGCTTGTCAATACAGATAAAAAAAAGGCCATTGTGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGGTAATTTTACAACGTGGGTTGTAGAAGAATGTACAGATATAGCATTTGCCTTCTATTAAATACGAGAGAGATCATCTCCTCATTATGTCACCTTGAATACCCACCCCATTGTACTAACTGCTTTTTTTTTACCCCCTTAAAATTATGTCATTGTCCTCATGTGAGTGCGGGTTTGAACCTCTGATCTCTAAAAGAAAAATATATGTCAATTTTCACTGAGTAACTTTCA 1197 46.37 MYGRAQPLTTGDQIASVPDCGDSGEPLDNRLVRYGANSLEDGGGVGGMIEDLNPDAVYASTGDGSDLVVQRSDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQHESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRSQDHTVTPAEQCESDGAKDLECKHGNHAPSNIVSFSNGDNSALMAEH 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35094400 35102345 + XM_039029489.1 Bhi04g01392 33001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01392 296 ProSiteProfiles Tify domain profile. 71 106 IPR010399 -
Bhi04g01392 296 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 MobiDBLite consensus disorder prediction 171 204 - -
Bhi04g01392 296 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 Gene3D - 197 257 IPR013088 GO:0006355|GO:0008270
Bhi04g01392 296 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Bhi04g01392 296 MobiDBLite consensus disorder prediction 272 296 - -
Bhi04g01392 296 PANTHER GATA TRANSCRIPTION FACTOR 25 26 275 - -
Bhi04g01392 296 MobiDBLite consensus disorder prediction 127 146 - -
Bhi04g01392 296 PANTHER GATA TRANSCRIPTION FACTOR 28 26 275 IPR045280 GO:0006355
Bhi04g01392 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 251 - -
Bhi04g01392 296 SMART tify_2 71 106 IPR010399 -
Bhi04g01392 296 MobiDBLite consensus disorder prediction 1 22 - -
Bhi04g01392 296 Pfam GATA zinc finger 206 242 IPR000679 GO:0006355|GO:0043565
Bhi04g01392 296 Pfam tify domain 73 105 IPR010399 -
Bhi04g01392 296 Pfam CCT motif 138 180 IPR010402 GO:0005515
Bhi04g01392 296 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01392 Bhi-Chr4:35094400 Bhi05g00918 Bhi-Chr5:32241302 1.05E-80 dispersed
Bhi04g01392 Bhi-Chr4:35094400 Bhi04g01394 Bhi-Chr4:35144633 1.18E-63 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
967 PF06203 CCT 7.40E-15 CL0281 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01392 - - csv:101214839 523.472