Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01393 TTGAAAAATCTCCGTCCCCGGCACTATTTCTCGTTATTATTATTTTTTTAAAAAAGAAAAACAAATAAAAGACTGAAAATTTGAAAATTACCCGTTTGAGTCTCTCCAAGGAAACACAAGGGCACATCTTGCAAATCCTTTAACCATTTCTGTTAGGGCTTTCATAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGGGCATGTCCAAGTTCCTACAATGATGGGGGATGATGACGCTGAATATGAAGATGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTAAGCGTAGCGAATCATGGAGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAACAGGTGTACCTACAATGGAAGTGCCATATGATCATAATAACAGGGGTATAGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAATCAGCTCATAGTTGCCTCCAAGATGGGACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCGAGGACTTTATGTAATGCATGTGGTTTGATGTGGGCGAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACTCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCAGGCATCCAGGATGAACATGGAACTCCCGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCTGACCCAGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCATTGCCCATGCGAATTGTCAATCATTCAACAAATGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCGTCAGATACCGATATAGACATCCCCACTAACTTTGATTAGAAGGTAATCGTTTGCTTAGGAGATTTCAAATAATACTTTGGCTGTTAATAATTTCTTGTGCCCGCATAAATCCTAGAGGTCAAGTTACCATCAACAATGGAGTGGCAGTTAGGACTTGTATAATTACAAAAAATGTCCATGACATAAGGTTCAAGTGTGCAGTGGTCATCTTTTGGCCGGAACGTTGCACACTGGTCTCAGCTGACGTTAGATCTTCTAACGATGTTGATATTGCTGCCAGAAACTGTTTGTATTCACTGTACGAGTCGAGTTGTTAGGGGATACGGTTGAGTTCTTCCATCAGTGTATGATCTGAGCGATTCATTTGGTAGGATTACTCTTGATTCAATTTTATTGGAAGGTCTGCTTCCCTAATTTATCGTCATAATGATGAAGGGATCAAATGCTTGTGGTGTTTGTATCTTAAGATAGACCTTTGTTTTGCTTCTAATTGACAAATATTATATACAATGACTTGAGCAGTTGCTAATAGAATAAATTTGCACATTGCGAGCCCTGTAATTTTAGTGATGGCCCCTTCCCTTCAGGGACCTTTTTAGTGTAGACTGATGGATTAGCCAATCGCAAAATTGGAAAGTTTGTACTGTTCTGTTTGGTCATGTATAAAAATAACTTGAAAGGAAAATTTACAGTA 1913 43.13 MAAANPQPLQARPFQGHVQVPTMMGDDDAEYEDGGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGIVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDPDEEDINETTGDLTNSLPMRIVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35144633 35153723 + XM_039028899.1 Bhi04g01393 33002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01393 361 SMART tify_2 72 107 IPR010399 -
Bhi04g01393 361 MobiDBLite consensus disorder prediction 281 361 - -
Bhi04g01393 361 Pfam tify domain 75 106 IPR010399 -
Bhi04g01393 361 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Bhi04g01393 361 MobiDBLite consensus disorder prediction 319 333 - -
Bhi04g01393 361 Pfam GATA zinc finger 211 247 IPR000679 GO:0006355|GO:0043565
Bhi04g01393 361 ProSitePatterns GATA-type zinc finger domain. 211 238 IPR000679 GO:0006355|GO:0043565
Bhi04g01393 361 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 361 - -
Bhi04g01393 361 SMART GATA_3 205 258 IPR000679 GO:0006355|GO:0043565
Bhi04g01393 361 ProSiteProfiles GATA-type zinc finger domain profile. 205 253 IPR000679 GO:0006355|GO:0043565
Bhi04g01393 361 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 255 - -
Bhi04g01393 361 CDD ZnF_GATA 210 254 IPR000679 GO:0006355|GO:0043565
Bhi04g01393 361 Pfam CCT motif 140 181 IPR010402 GO:0005515
Bhi04g01393 361 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bhi04g01393 361 MobiDBLite consensus disorder prediction 1 49 - -
Bhi04g01393 361 PANTHER GATA TRANSCRIPTION FACTOR 28 1 361 IPR045280 GO:0006355
Bhi04g01393 361 Gene3D - 203 261 IPR013088 GO:0006355|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01393 - - - mcha:111004894 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01393 Bhi-Chr4:35144633 Bhi04g01396 Bhi-Chr4:35144811 0 dispersed
Bhi04g01393 Bhi-Chr4:35144633 Bhi04g01394 Bhi-Chr4:35144633 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi12g02239 . 1 180 Tify Gene Family AT4G14713 53.1 2.1e-46 183.3
Bhi12g02238 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02237 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02236 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02235 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
968 PF06203 CCT 1.40E-13 CL0281 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01393 Bhi_Chr04 FPKM 0.590909 0.548182 0.691967 0.965237 1.291707 1.440327 1.088416 0.690263 1.044858 1.42061