Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01395 TTGAAAAATCTCCGTCCCCGGCACTATTTCTCGTTATTATTATTTTTTTAAAAAAGAAAAACAAATAAAAGACTGAAAATTTGAAAATTACCCGTTTGAGTCTCTCCAAGGAAACACAAGGGCACATCTTGCAAATCCTTTAACCATTTCTGTTAGGGCTTTCATAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGGGCATGTCCAAGTTCCTACAATGATGGGGGATGATGACGCTGAATATGAAGATGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTAAGCGTAGCGAATCATGGAGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTTTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGGTACAAGCCGTGCTCTTACTTCTTGGAGGGCGTGATGTGCCAACAGGTGTACCTACAATGGAAGTGCCATATGATCATAATAACAGGGGTATAGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAGGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAATCAGCTCATAGTTGCCTCCAAGATGGGACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCGAGGACTTTATGTAATGCATGTGGTTTGATGTGGGCGAACAAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGAAACTCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCAGGCATCCAGGATGAACATGACATAAATGAAACCACTGGAGACCTTACAAATTCATTGCCCATGCGAATTGTCAATCATTCAACAAATGATGATGAGCAGGAACCTCTTGTTGAACTTGCTAATCCGTCAGATACCGATATAGACATCCCCACTAACTTTGATTAGAAGGTAATCGTTTGCTTAGGAGATTTCAAATAATACTTTGGCTGTTAATAATTTCTTGTGCCCGCATAAATCCTAGAGGTCAAGTTACCATCAACAATGGAGTGGCAGTTAGGACTTGTATAATTACAAAAAATGTCCATGACATAAGGTTCAAGTGTGCAGTGGTCATCTTTTGGCCGGAACGTTGCACACTGGTCTCAGCTGACGTTAGATCTTCTAACGATGTTGATATTGCTGCCAGAAACTGTTTGTATTCACTGTACGAGTCGAGTTGTTAGGGGATACGGTTGAGTTCTTCCATCAGTGTATGATCTGAGCGATTCATTTGGTAGGATTACTCTTGATTCAATTTTATTGGAAGGTCTGCTTCCCTAATTTATCGTCATAATGATGAAGGGATCAAATGCTTGTGGTGTTTGTATCTTAAGATAGACCTTTGTTTTGCTTCTAATTGACAAATATTATATACAATGACTTGAGCAGTTGCTAATAGAATAAATTTGCACATTGCGAGCCCTGTAATTTTAGTGATGGCCCCTTCCCTTCAGGGACCTTTTTAGTGTAGACTGATGGATTAGCCAATCGCAAAATTGGAAAGTTTGTACTGTTCTGTTTGGTCATGTATAAAAATAACTTGAAAGGAAAATTTACAGTA 1835 42.83 MAAANPQPLQARPFQGHVQVPTMMGDDDAEYEDGGGGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGIVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHDINETTGDLTNSLPMRIVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 35144633 35153723 + XM_039028902.1 Bhi04g01395 33004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01395 335 Pfam CCT motif 140 181 IPR010402 GO:0005515
Bhi04g01395 335 SMART tify_2 72 107 IPR010399 -
Bhi04g01395 335 Pfam tify domain 75 106 IPR010399 -
Bhi04g01395 335 Gene3D - 203 261 IPR013088 GO:0006355|GO:0008270
Bhi04g01395 335 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Bhi04g01395 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 255 - -
Bhi04g01395 335 ProSitePatterns GATA-type zinc finger domain. 211 238 IPR000679 GO:0006355|GO:0043565
Bhi04g01395 335 SMART GATA_3 205 258 IPR000679 GO:0006355|GO:0043565
Bhi04g01395 335 Pfam GATA zinc finger 211 247 IPR000679 GO:0006355|GO:0043565
Bhi04g01395 335 ProSiteProfiles GATA-type zinc finger domain profile. 205 253 IPR000679 GO:0006355|GO:0043565
Bhi04g01395 335 PANTHER GATA TRANSCRIPTION FACTOR 28 1 312 IPR045280 GO:0006355
Bhi04g01395 335 CDD ZnF_GATA 210 254 IPR000679 GO:0006355|GO:0043565
Bhi04g01395 335 ProSiteProfiles Tify domain profile. 72 107 IPR010399 -
Bhi04g01395 335 PANTHER GATA TRANSCRIPTION FACTOR 28-LIKE ISOFORM X1 1 312 - -
Bhi04g01395 335 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01395 - - - csv:101214596 601.668
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01395 Bhi-Chr4:35144633 Bhi09g00226 Bhi-Chr9:4919810 1.12E-72 dispersed
Bhi04g01394 Bhi-Chr4:35144633 Bhi04g01395 Bhi-Chr4:35144633 0 tandem
Bhi04g01395 Bhi-Chr4:35144633 Bhi04g01396 Bhi-Chr4:35144811 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g531 . . . Bda03g00450 Bpe02g00145 . . . Cmo05g00561 . . . . Car12g00188 . . . Bhi04g01395 Tan02g2468 . . Hepe10g0439 . . . . . . . . . . . . . . . . . . . Bda11g00806 . . . . Bma02g00116 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01015 Csa02g02198 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi04g01392 . 47 296 Tify Gene Family AT4G24470 53.4 3.1e-67 253.1
Bhi05g00919 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi05g00918 . 89 267 Tify Gene Family AT4G24470 61.0 5.5e-48 189.1
Bhi09g00226 . 1 281 Tify Gene Family AT1G51600 59.8 3.7e-86 315.8
Bhi09g00227 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00229 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi09g00228 . 1 290 Tify Gene Family AT1G51600 58.4 2.4e-85 313.2
Bhi05g00919 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi05g00918 . 86 303 Tify Gene Family AT1G51600 54.9 7.9e-52 201.8
Bhi04g01395 . 78 299 Tify Gene Family AT1G51600 50.9 5.1e-51 199.1
Bhi04g01393 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01396 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01394 . 78 253 Tify Gene Family AT1G51600 59.0 1.1e-50 198.0
Bhi04g01392 . 41 250 Tify Gene Family AT1G51600 53.5 1.1e-48 191.4
Bhi09g00226 . 1 221 Tify Gene Family AT3G21175 56.6 2.4e-58 223.0
Bhi09g00227 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00229 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi09g00228 . 1 230 Tify Gene Family AT3G21175 54.3 3.8e-56 215.7
Bhi12g02239 . 1 180 Tify Gene Family AT4G14713 53.1 2.1e-46 183.3
Bhi12g02238 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02237 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02236 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
Bhi12g02235 . 1 186 Tify Gene Family AT4G14713 51.5 2.0e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
970 PF06203 CCT 1.20E-13 CL0281 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01395 Bhi_Chr04 FPKM 20.338493 22.329479 23.881413 24.977905 18.391533 21.219925 19.947416 26.045414 24.699308 26.892431