Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bhi04g01469	CCCTGGCGGGAAAATCCCTCTAATGCCCAAAGAAGCCCCGCCACAATTACAAAAAGACCCACTCATATTGCGTGAGCCAAAAAGTACTTGAGGGCTATTCTCGTCATATAAAATTTTCAGCACCGTCTTCCCGCCATTACAAATCCCCAGATTGTCATCGATTCAATCAAATCATCTGTTTCTAGACCGAAAACCATTTTTCAGGCATCGAATTCTTGCAGTTCATACAGATTCCGGGATGGCGGAAGAGGAATCCGGGGACGCTATCCGGCCGGAATTCCCGACGGGACGAGTGAAGAAGATAATGAAGCTCGACAAGGACATTGAAAAAGTGAATTCAGAAGCCCTGTTTTTAGTCTCATGCGCCACCGAACTCTTCCTTAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAGACCGTGAAGCTCGAACACATCCGAATCGCCGTCAAAAGGCATCGATCCATCAGTGATTTTCTCCTCGATTCGCTTCCTCTTCCGCCTCAGCCGTCGGATGCGCCGGCGAAGGACGAGAATCGCACTCGCACTGTCGTAGATAAAGTGGTTCCTGAAGGAACCCGTCGAATCGATGATTTTTTCCGCCGGCCAGCTAAGACAACGTCTGCGGAGAACAACGAGTCATAGGCCCAAAATCTTCAACAGGCAAAAGCTCACAAGCAC	697	49.21	MAEEESGDAIRPEFPTGRVKKIMKLDKDIEKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAVKRHRSISDFLLDSLPLPPQPSDAPAKDENRTRTVVDKVVPEGTRRIDDFFRRPAKTTSAENNES	140

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
4	36657833	36658529	-	XM_039028300.1	Bhi04g01469	33078

Annotation

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Bhi04g01469	140	SUPERFAMILY	Histone-fold	12	94	IPR009072	GO:0046982
Bhi04g01469	140	PANTHER	NUCLEAR FACTOR Y, SUBUNIT C13	2	129	-	-
Bhi04g01469	140	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	13	76	IPR003958	-
Bhi04g01469	140	Gene3D	Histone, subunit A	1	91	IPR009072	GO:0046982
Bhi04g01469	140	PANTHER	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	2	129	-	-

Pathway

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bhi04g01469	-	-	-	cmo:103488501	213.772

Dupl-types

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Bhi04g01469	Bhi-Chr4:36657833	Bhi02g00523	Bhi-Chr2:10022921	1.97E-10	dispersed

Syn-Families

Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
Bhi02g00523	.	35	219	CCAAT-HAP5 Transcription Factor Family	AT3G48590	89.5	1.4e-88	323.6
Bhi02g02032	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT3G48590	65.1	1.2e-52	204.1
Bhi02g02028	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT3G48590	65.1	1.2e-52	204.1
Bhi02g02029	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT3G48590	65.1	1.2e-52	204.1
Bhi02g02031	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT3G48590	65.1	1.2e-52	204.1
Bhi02g02030	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT3G48590	65.1	1.2e-52	204.1
Bhi05g00797	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT3G48590	68.8	1.6e-52	203.8
Bhi05g00796	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT3G48590	68.8	1.6e-52	203.8
Bhi05g00794	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT3G48590	68.8	1.6e-52	203.8
Bhi05g00795	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT3G48590	68.8	1.6e-52	203.8
Bhi02g02032	.	1	260	CCAAT-HAP5 Transcription Factor Family	AT1G08970	55.6	7.6e-55	211.5
Bhi02g02028	.	1	260	CCAAT-HAP5 Transcription Factor Family	AT1G08970	55.6	7.6e-55	211.5
Bhi02g02029	.	1	260	CCAAT-HAP5 Transcription Factor Family	AT1G08970	55.6	7.6e-55	211.5
Bhi02g02031	.	1	260	CCAAT-HAP5 Transcription Factor Family	AT1G08970	55.6	7.6e-55	211.5
Bhi02g02030	.	1	260	CCAAT-HAP5 Transcription Factor Family	AT1G08970	55.6	7.6e-55	211.5
Bhi05g00797	.	28	180	CCAAT-HAP5 Transcription Factor Family	AT1G08970	70.6	1.8e-48	190.3
Bhi05g00796	.	28	180	CCAAT-HAP5 Transcription Factor Family	AT1G08970	70.6	1.8e-48	190.3
Bhi05g00794	.	28	180	CCAAT-HAP5 Transcription Factor Family	AT1G08970	70.6	1.8e-48	190.3
Bhi05g00795	.	28	180	CCAAT-HAP5 Transcription Factor Family	AT1G08970	70.6	1.8e-48	190.3
Bhi02g00523	.	34	133	CCAAT-HAP5 Transcription Factor Family	AT1G08970	83.0	1.1e-42	171.0
Bhi02g02032	.	16	250	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.6	7.9e-62	234.6
Bhi02g02028	.	16	250	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.6	7.9e-62	234.6
Bhi02g02029	.	16	250	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.6	7.9e-62	234.6
Bhi02g02031	.	16	250	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.6	7.9e-62	234.6
Bhi02g02030	.	16	250	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.6	7.9e-62	234.6
Bhi05g00797	.	28	224	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.1	3.3e-52	202.6
Bhi05g00796	.	28	224	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.1	3.3e-52	202.6
Bhi05g00794	.	28	224	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.1	3.3e-52	202.6
Bhi05g00795	.	28	224	CCAAT-HAP5 Transcription Factor Family	AT1G54830	59.1	3.3e-52	202.6
Bhi02g00523	.	34	193	CCAAT-HAP5 Transcription Factor Family	AT1G54830	67.3	2.8e-51	199.5
Bhi02g00523	.	34	192	CCAAT-HAP5 Transcription Factor Family	AT5G50480	54.7	5.7e-38	155.2
Bhi02g00523	.	35	219	CCAAT-HAP5 Transcription Factor Family	AT5G63470	81.4	1.1e-80	297.4
Bhi05g00797	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT5G63470	66.4	6.7e-49	191.8
Bhi05g00796	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT5G63470	66.4	6.7e-49	191.8
Bhi05g00794	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT5G63470	66.4	6.7e-49	191.8
Bhi05g00795	.	82	225	CCAAT-HAP5 Transcription Factor Family	AT5G63470	66.4	6.7e-49	191.8
Bhi02g02032	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT5G63470	62.6	8.8e-49	191.4
Bhi02g02028	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT5G63470	62.6	8.8e-49	191.4
Bhi02g02029	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT5G63470	62.6	8.8e-49	191.4
Bhi02g02031	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT5G63470	62.6	8.8e-49	191.4
Bhi02g02030	.	82	250	CCAAT-HAP5 Transcription Factor Family	AT5G63470	62.6	8.8e-49	191.4
Bhi05g00797	.	46	213	CCAAT-HAP5 Transcription Factor Family	AT1G56170	81.7	2.0e-64	243.0
Bhi05g00796	.	46	213	CCAAT-HAP5 Transcription Factor Family	AT1G56170	81.7	2.0e-64	243.0
Bhi05g00794	.	46	213	CCAAT-HAP5 Transcription Factor Family	AT1G56170	81.7	2.0e-64	243.0
Bhi05g00795	.	46	213	CCAAT-HAP5 Transcription Factor Family	AT1G56170	81.7	2.0e-64	243.0
Bhi02g02032	.	54	218	CCAAT-HAP5 Transcription Factor Family	AT1G56170	67.2	4.9e-50	195.3
Bhi02g02028	.	54	218	CCAAT-HAP5 Transcription Factor Family	AT1G56170	67.2	4.9e-50	195.3
Bhi02g02029	.	54	218	CCAAT-HAP5 Transcription Factor Family	AT1G56170	67.2	4.9e-50	195.3
Bhi02g02031	.	54	218	CCAAT-HAP5 Transcription Factor Family	AT1G56170	67.2	4.9e-50	195.3
Bhi02g02030	.	54	218	CCAAT-HAP5 Transcription Factor Family	AT1G56170	67.2	4.9e-50	195.3
Bhi02g00523	.	35	158	CCAAT-HAP5 Transcription Factor Family	AT1G56170	74.8	6.3e-50	194.9
Bhi07g01165	.	59	340	CCAAT-HAP5 Transcription Factor Family	AT3G12480	51.8	4.0e-61	232.6
Bhi04g01469	.	3	135	CCAAT-HAP5 Transcription Factor Family	AT5G43250	65.7	1.3e-38	156.8

Syn-Orthogroups

Select	Orthogroup	Bda	Bhi	Blo	Bma	Bpe	Cam	Car	Cco	Cec	Chy	Cla	Clacu	Cma	Cme	Cmetu	Cmo	Cmu	Cone	Cpe	Cre	Csa	HCH	Hepe	Lac	Lcy	Lsi	Mch	Sed	Tan	Vvi	Total
	OG0009175	3	1	1	1	0	1	2	1	1	1	1	1	1	1	1	2	1	2	2	1	1	1	1	1	0	1	1	1	1	0	33

Regulatory proteins

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	973	PF00808	CBFD_NFYB_HMF	5.50E-20	CL0012	Bhi	TF

Transcriptome

Select	Gene	Chr	Type	da1	da2	da3	da4	da5	da6	da7	da8	da9	da10
	Bhi04g01469	Bhi_Chr04	FPKM	1.605201	0.474415	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0