Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01503 TCTCGGCCCAAAATCCCTCCGTTCCGGACTTTTCCCCCTTTTATCAAATTCATTTAATTTCACCTCTTTCCTCCGATTCAAATCCGCGTTCTTTTCTCTCTCTCTCTCTCTTCTTCCTTCTCCCCACTGTCGTCTCTCAGAGTCAGAGGTCAAATATTTGGCTGTTTTTTTTTCCCTCCTTTTGCTTCCTCCCCTCTCTCTTCTTCCTCCCCATGCTTCTCGATCTGTAGTTCATTCTTCTCTTCTCAATTTTCTTCCTCATCCACACTCTTCTTCCTTCACTCTATCCTACCTCTGCTACTTCAACTTCTACTTTCATCGTCAGAGCTGTAGGCTATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTCTACGGATTTCCTAGTGAGCAGTGGGAGGTCAATTTGCCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGAATGCAAGAAAAGGACTGGCTATCTTTGGTTGCGGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAACGGAGTTCCGAACCTCAAATAAAAAATACAAAAGTTCAATCGAAAGACGAGGAAGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAGTGTGTGAAGATCACTCCGGCGAGAGCCGAGCACATTAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGATGCGGTTTGCACAGAACACGTGTGGTATTTATTAGCAACAACTTCTCCTCCCTTCCCAAACCAAAGTTTAAAAAAAAGGGGAATAAAAAAAGGAAAAAGAATGAAGATATGTCAAGTATTGTTCCCCTTAGGATCTCAGCGTAGACCACTAATTGTGTATTAGGATTAGCTTAAACTTTAAATAGGACTATGGTTAGGTTGGAAATTTATATTCTATGGCATATGTGGACAGACTCCTTTCTGTTTGTGTATTGTATGAACTATGTCTTTTGTACGTGGTATAAGTATGTGGTATAATGTGTTGTTAAAAAGTTCATATATGTCGGGA 1363 42.33 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQRSSEPQIKNTKVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37051316 37056008 - XM_039028998.1 Bhi04g01503 33112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01503 232 MobiDBLite consensus disorder prediction 144 172 - -
Bhi04g01503 232 Pfam PHD-finger 179 228 IPR019787 -
Bhi04g01503 232 CDD PHD_AL_plant 178 228 IPR044104 -
Bhi04g01503 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 227 IPR013083 -
Bhi04g01503 232 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bhi04g01503 232 SUPERFAMILY FYVE/PHD zinc finger 168 229 IPR011011 -
Bhi04g01503 232 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 144 - -
Bhi04g01503 232 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 142 232 - -
Bhi04g01503 232 ProSitePatterns Zinc finger PHD-type signature. 179 225 IPR019786 -
Bhi04g01503 232 ProSiteProfiles Zinc finger PHD-type profile. 176 228 IPR019787 -
Bhi04g01503 232 SMART PHD_3 178 226 IPR001965 -
Bhi04g01503 232 PANTHER CPG BINDING PROTEIN 4 144 IPR045104 GO:0006355|GO:0042393
Bhi04g01503 232 PANTHER CPG BINDING PROTEIN 142 232 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01503 Bhi-Chr4:37051316 Bhi09g00348 Bhi-Chr9:7201780 1.40E-128 dispersed
Bhi04g01503 Bhi-Chr4:37051316 Bhi04g01504 Bhi-Chr4:37051316 1.11E-172 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
977 PF12165 Alfin 1.70E-69 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01503 - - csv:101208889 443.736