Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01504 TTCTCGGCCCAAAATCCCTCCGTTCCGGACTTTTCCCCCTTTTATCAAATTCATTTAATTTCACCTCTTTCCTCCGATTCAAATCCGCGTTCTTTTCTCTCTCTCTCTCTCTTCTTCCTTCTCCCCACTGTCGTCTCTCAGAGTCAGAGGTCAAATATTTGGCTGTTTTTTTTTCCCTCCTTTTGCTTCCTCCCCTCTCTCTTCTTCCTCCCCATGCTTCTCGATCTGTAGTTCATTCTTCTCTTCTCAATTTTCTTCCTCATCCACACTCTTCTTCCTTCACTCTATCCTACCTCTGCTACTTCAACTTCTACTTTCATCGTCAGAGCTGTAGGCTATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATCAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTCTACGGATTTCCTAGTGAGCAGTGGGAGGTCAATTTGCCTGCGGAAGAGGTGCCTCCAGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGACGGAATGCAAGAAAAGGACTGGCTATCTTTGGTTGCGGTGCATAGTGATGTTTGGCTGCTTTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGCCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATTCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGTTCAATCGAAAGACGAGGAAGAGGAAGGCTTGGAAGAGGAAGATGAGGAAGAACATGGAGAAACACTTTGCGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTCTGGATTTGCTGTGATATTTGTGAGAAATGGTTCCATGGGAAGTGTGTGAAGATCACTCCGGCGAGAGCCGAGCACATTAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAATCCGACCCTGATGCGGTTTGCACAGAACACGTGTGGTATTTATTAGCAACAACTTCTCCTCCCTTCCCAAACCAAAGTTTAAAAAAAAGGGGAATAAAAAAAGGAAAAAGAATGAAGATATGTCAAGTATTGTTCCCCTTAGGATCTCAGCGTAGACCACTAATTGTGTATTAGGATTAGCTTAAACTTTAAATAGGACTATGGTTAGGTTGGAAATTTATATTCTATGGCATATGTGGACAGACTCCTTTCTGTTTGTGTATTGTATGAACTATGTCTTTTGTACGTGGTATAAGTATGTGGTATAATGTGTTGTTAAAAAGTTCATATATGTCGGGA 1424 41.57 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTAKKQVKDKSSVSNHSSNKSKSNSKRSSEPQIKNTKVQSKDEEEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRIRP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37051316 37056009 - XM_039028997.1 Bhi04g01504 33113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01504 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Bhi04g01504 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Bhi04g01504 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Bhi04g01504 252 CDD PHD_AL_plant 198 248 IPR044104 -
Bhi04g01504 252 PANTHER CPG BINDING PROTEIN 4 252 IPR045104 GO:0006355|GO:0042393
Bhi04g01504 252 SMART PHD_3 198 246 IPR001965 -
Bhi04g01504 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Bhi04g01504 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bhi04g01504 252 MobiDBLite consensus disorder prediction 145 173 - -
Bhi04g01504 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 252 - -
Bhi04g01504 252 MobiDBLite consensus disorder prediction 145 192 - -
Bhi04g01504 252 Pfam PHD-finger 199 248 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01504 Bhi-Chr4:37051316 Bhi09g00348 Bhi-Chr9:7201780 1.32E-130 dispersed
Bhi11g00926 Bhi-Chr11:28642454 Bhi04g01504 Bhi-Chr4:37051316 5.34E-112 dispersed
Bhi04g01503 Bhi-Chr4:37051316 Bhi04g01504 Bhi-Chr4:37051316 1.11E-172 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
978 PF12165 Alfin 2.10E-69 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01504 - - csv:101208889 461.455