Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01513 TACTTCGGTAATAGGAGTGTCATACCCGCGCAAAGTTTATGATCATCGGCCATTACCGAATTGAACCCTAACTGCAACTGCAAGCTTGCCGGTTGGATTTTGATATTAGGAAAAATCTCTGCTCCTCTGAATATTGAAATTCTCCAACTCTACAATGATCTGAGATTCTTTCGATCGATCCCCGTGTTTCGCCATGGCTATTCAATTTAAATTCAGGAGCTCCGTGAACTTCGACTCGGTGGATATCCAAGGCCGACCTTCCATATCAATTGGCGATCTTAAATTCAAAATTATTCGCATGAAGAACCTTGATACCTGCCAAAACTTTGATCTCGTATTCTCCGATGCCCGAACCGGCCAAGATTTGGCCGACGAGAAACTTGAAATTCCAAGCGGTTCTTGCGTGATAGTCAAGAGAGTTCCCGCAGGATCAGTTCCTTCCAATGTTGTGCATCACGACTTGTTTGGGAATGTTCAAGTCAAAGACACTGACATGGTTAATTCATCTCGTCCAGTGAATGCTGAGACAGACAATTTTGATGATTTTGGTGTCGACTTATACCCTATTCACAAAGCAAACTCATCAATTTCTCTCAATAATAAAAATAACAATGCTGTTAGACATTATAAGGAGACTGAAAGAGGATATATTGAGGCTGAAGGAAGTGGTATTAGTGAGGCCATCCAAGGAGATTCAAATAATGGCACAACAGTTGGAGGAACTGTCCTGCAGACAAACATAAAAGTTAATGTTGGCGAGGGCATTGGTTTGGAGAAACCAATTGCTCCAGTTAATCATAATTGTGAAATTCCTTCAGAACTGAAGTGTATACTTTGCAACTCACTCTTTGTGGATGCTGTAATTACTGGTTGCTGTAAGCATAGTTTTTGTGAGAAATGCATTCATCATGTTCTGCTGCAAAAGGCAATGTGCCCTAAGTGTGCCTCTACTAAGTATAAACTAGAAGATTTGTTGCCAAATTTTTCTCTTAGGCAAATTGTTGCCCATTTCCTTGAGTCTCAGATCCTGATGGGCGACTCAGAAAATGCTCATCATCATGAAGCATCAGATGAAGAATCAAGAATTGAAGGAAAAGACATGCCTTATTTGCCTTATGCTACTAATAGGGGTTATAATCAAGAAGTGGTGGAAGACGTTCCTGTCTCATCAATAAGAAGAAATATGACGGTTAAAATTGATGGAGCACAAGTTCGATCGTGCCATCCTGATAATTTTGGTGGAAAACCTCATGACCTCCCTCCTTTTGATGATTGTCAAGGTGAAAGCCAGCCCGTTTTTAGGGATTTCAAGCATGGGTTGCTGGTCAATGACTCTGATATGCCGAGCAAAATCCAAAATCTAACAGATTTTAGAAGACACAAAAAGCGTGGCCGTACTTGTTACATGTGTGGTTCTCTGGACCATCTCATTAGAGACTGTCCAGGTGCTTCAAAACCAAATCCCATGCATCTAATGGGAGCTTCGCCATATTATGCATCACCTTGGCCTTGTGTCAGTTCTTTTACGAACCTATATGGTTGTCCCATGGCTTTCAATACACCAATGGTGCCTGATGCAAATTCTTACTGGGCATCTATTTATGGTGGATACCCTGTCCCAAGTGGATTCGTGGGCATGAGAGACATGAATGCTCCACCACTTCGGAAGACTGAAGAGTTCTGTGCTGGTTATTCAGAATTTGCAGACCTTAGTGACACTAATAGAAACAGGACAAAATCCGAAATTCGTACCTGGAGGGTAATGCCTTTCTCCAGTGAGAATGGGAGTGATGGAGAAGATCATGTTGGTAAGAAGAGACGTCAACATGAGCGGGATGGAAGATCAAGAGACTATAGAATGCTTGTAGAGAAGCAACATCCGCGCAAAGAAAATATCAAAGAAATAAATTGGCTCTATGACGAGAAAAGGAGGAGTTCCTATTCTTCTAAAGATGCAATGATAAATAGATTAAACGAGAGATTAAAGTTGGACACAGAAGGCTTGCCTCGCAGCACCAAATTTCCAACTAATGAGAGATCTGCACATTATCATAGATGCTTCAGGGAGGTTGGTGGGAGGACAGATGAATGTTGCAGTCATGCCGGCTCGAATGACCATAAAAGATACAAACAAAAAGAAGATAACATTGATACGGTTGATGTTGACTTGAAGTGTCATGCTAAGAAACATCACAGCAGCTCGAAGTCAGATTTGGCACGTAGCTATTCCAGCAGTCAGAAACTCCTACAAAAAGAGTCTCGTTTCATGTCTAGATATTCTAAGCACAATGAGCTTGCTCAATATCATCAGCAAATGGTTGGTGGGACAGATTATAATCATGAAGAATGGAATCATAAGTATAAACGAAAAAGTTTGGAGTGTGGAAGCTAGCAAGCGAGGTTCTTAATTCATGGAGCAATGGACGTTAAACTATGGAGGATTTTGGTAAGCTGATTTTGTTGAAGCAGTTGAAGGTACGTTTCTTTCGGATGGTATTATGGGGGTTGAAAGCTTAAATAATAATATAATAATCTATAATTGCTCTTAGTTTGGGTGAATATTGAATTTAGAGGGAAAATAATCAATTTATACCTCCAACTTAAAATCCTACACATCTCTATTAATTAAAACTAAAAAATTAAAAAAGGTTCATGAATCAATTTATACTCTTTTTTAGATTGTCTTCAAAGTGCTAATGCAAAATTTTCACACGTGTAAATGTTGTGACTGACATAGGAATGTGGGAATTAGGTGGATATTTCGGGCTTTCATAAATATATGTTCTTTTCATCCATTTCTAATATTTCTCTAATGGTTTAAATTAATTAAAAAGAGTTACGTGGATTTTTTCCCAACTTTAGAAGGATTTTTAGTGAATAATTTTATTTAGACAATTTTGAGTTAATATTGAAAGGAATAAAGTATAAATAAATAGAGTTGCTAGTTCATGTTTTTGAACTTTTATGTTGTGTTAAGTTTTGGAACTTAAAATTTTTTGAACAGAAGCCAAGATTCTCAATTTTATATTAAATAAGACCCTAAATTTTAATAGTATTTGACATATACATACATATATATACATACACACACATATATACACACAGTATTTATATTCTTGAACTTTTAATTTTATTCTGACAGATTTCAAGTTTATTAAATCACTTCTAAAAAAATCATGAACTTCTTGGAAAAATCATAGTTGGACAGACACAAACTCAGTAATTATGTTAAAGTTTTAATTGTTTTTAGACTTTAATTTAGTCTGTATTTTTAACTACAATAGGAATGGTAGATGTGGGGTGAAAATTAATCTCTCTATTTTATTAGTTTTTAAAATTCCATTTTGGTCCCTGTATTTTAAAAATTGTGCAACTTGGAGTATGAAATTCAAAGGGATCAAATATAAAATATAATTGGACGAAGGAACTTTGGGGCACCCTTAGGGTAATACACCTAGTGTTGTTTCCACAAAAAATATCTTAAGAAGATTATGCAGGATGTGAAAGGGTTTATCTAGAAGAATCACGTTATAATTAGGAAGGTGTTTTATCAGCCAATTTCATTCTTTTAACTAAGTGAGGAAGAATTTGCAAATTGATAAAATCTGGCAGATAAATTTTCTCCCCTAACATGAAAATACAATAGATTAATAGTCATTCGATAAAAAACAAATCATTTGAATATCTCATTTTCTATCCCATTCAATAGAGCAATTATGATCTGAAAGTTGACCAGAGTTCGTCCCAAATATGCTCTAGAAAGATTAGATGTGATTAGAGCAAAAATCGAATAATTCTATGTGGTGGAACAAAATCAAAATCTCTCATTTCTTGGCGATTTTTTTTTTTGGATTTCTAAAGAAATATTGTTATGTTACCTTGAACGGTGCACCTCTGGTAGCATAGTCGAGACAATGTTAGCACCTGCACCAAATAGAAAATTCTTGTTTTCGAAATGTGTCGAAACTTTGGGTAGCCAAAAAAAAAAAGTGGGATTCTATAGAGTAGATAATAGAATAGGATTGTTCCATTATTACTAAAAAAAATAGACCCCAAGACATTTAGATCTAGTTGTACTTAAACTTTAGGATCTCGTTTGTGAGGAGGTATCCCTTCTCCCGAAGTTACGTGGCTATTTTGCCTTAGAAAAAATGGGTTTGGATCTCCCTCAGAATGATTTGGAGGATCTAAGAGGCATATTGATTTGTGTATTTCTCATATGAATTCATTTCGAACATCTCATAATA 4247 36.21 MAIQFKFRSSVNFDSVDIQGRPSISIGDLKFKIIRMKNLDTCQNFDLVFSDARTGQDLADEKLEIPSGSCVIVKRVPAGSVPSNVVHHDLFGNVQVKDTDMVNSSRPVNAETDNFDDFGVDLYPIHKANSSISLNNKNNNAVRHYKETERGYIEAEGSGISEAIQGDSNNGTTVGGTVLQTNIKVNVGEGIGLEKPIAPVNHNCEIPSELKCILCNSLFVDAVITGCCKHSFCEKCIHHVLLQKAMCPKCASTKYKLEDLLPNFSLRQIVAHFLESQILMGDSENAHHHEASDEESRIEGKDMPYLPYATNRGYNQEVVEDVPVSSIRRNMTVKIDGAQVRSCHPDNFGGKPHDLPPFDDCQGESQPVFRDFKHGLLVNDSDMPSKIQNLTDFRRHKKRGRTCYMCGSLDHLIRDCPGASKPNPMHLMGASPYYASPWPCVSSFTNLYGCPMAFNTPMVPDANSYWASIYGGYPVPSGFVGMRDMNAPPLRKTEEFCAGYSEFADLSDTNRNRTKSEIRTWRVMPFSSENGSDGEDHVGKKRRQHERDGRSRDYRMLVEKQHPRKENIKEINWLYDEKRRSSYSSKDAMINRLNERLKLDTEGLPRSTKFPTNERSAHYHRCFREVGGRTDECCSHAGSNDHKRYKQKEDNIDTVDVDLKCHAKKHHSSSKSDLARSYSSSQKLLQKESRFMSRYSKHNELAQYHQQMVGGTDYNHEEWNHKYKRKSLECGS 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 37677402 37686695 - XM_039029293.1 Bhi04g01513 33122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01513 732 CDD vRING-HC-C4C4_RBBP6 207 250 - -
Bhi04g01513 732 Pfam DWNN domain 3 77 IPR014891 GO:0008270
Bhi04g01513 732 MobiDBLite consensus disorder prediction 526 552 - -
Bhi04g01513 732 SMART DWNN_2 3 77 IPR014891 GO:0008270
Bhi04g01513 732 SMART c2hcfinal6 402 418 IPR001878 GO:0003676|GO:0008270
Bhi04g01513 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 280 IPR013083 -
Bhi04g01513 732 Pfam Zinc knuckle 401 417 IPR001878 GO:0003676|GO:0008270
Bhi04g01513 732 ProSiteProfiles Zinc finger CCHC-type profile. 403 417 IPR001878 GO:0003676|GO:0008270
Bhi04g01513 732 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Bhi04g01513 732 SUPERFAMILY RING/U-box 204 275 - -
Bhi04g01513 732 Gene3D - 395 456 - -
Bhi04g01513 732 MobiDBLite consensus disorder prediction 533 552 - -
Bhi04g01513 732 SUPERFAMILY Retrovirus zinc finger-like domains 394 421 IPR036875 GO:0003676|GO:0008270
Bhi04g01513 732 Gene3D - 1 81 - -
Bhi04g01513 732 ProSiteProfiles DWNN domain profile. 3 77 IPR014891 GO:0008270
Bhi04g01513 732 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 1 727 IPR033489 GO:0006397|GO:0016567|GO:0061630
Bhi04g01513 732 ProSiteProfiles Zinc finger RING-type profile. 212 250 IPR001841 -
Bhi04g01513 732 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBBP6-LIKE ISOFORM X1 1 727 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01513 - - - bhj:120075688 1499.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01513 Bhi-Chr4:37677402 Bhi04g01516 Bhi-Chr4:37679361 0 dispersed
Bhi04g01513 Bhi-Chr4:37677402 Bhi04g01514 Bhi-Chr4:37679361 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g150 . . . . . . . . . Cmo12g00602 . . . Car12g00644 . Cpe07g00577 . Bhi04g01513 Tan02g1585 . . Hepe08g1435 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma12g00661 . . . . . . . . . . . Cla08g00988 . . . . . . Lsi08g00832 . Chy03g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010055 0 4 0 0 0 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01513 Bhi_Chr04 FPKM 3.609524 1.623144 6.102239 6.968913 7.935077 6.076027 5.421 14.869464 13.537461 15.891491