Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01547 ATATTAGAAAATGGGATGAAAAGACTGAAAAAGGGATGTAAAGGGGGAAAAAAACAAAACAAAACAAAACAAAAGAGTGAGTTTGAAAAGCTCATAGCCGGCCGGGCTACTTCTTATCTTGTCAACGATGGAGCATAAATCGTGGATGGCGAGCGGCGGTAAGCCCATCCGGTGCAGAGCGGCGGTGTGCCGGAAGGCTGGGGAGGCGTTGGTAATGGAGGACATAATGGTGGCTCCGCCGATGACCCATGAGGTTCGGATACGGATCATTTGCACCTCCCTCTGTCATACCGATATCAAATATTGGAACATGAAGGATCCTCCAGGGATTGTTCCACGAATTTTGGGCCACGAAGCTGTTGGAGAGGTTGAGAGTGTAGGAGGTGAAGTAAGTGAAGTAAAACAAGGCGATTTTGTGATCCCAACATTCATGGCCGAGTGTGGGGAGTGTAGAGATTGCACATCAAGTAAAAGCAATCTTTGCTCTAAACAGCCTTTCAAACTCTCTCAAGGGATGCCTCGATGTGGGACAAGAGTGGGTGCTGCTTGGAGAACAGCAAATGTGGAAAAGGGATCTACTGTTGCCATTTTTGGGCTGGGGACTGTAGGCTTGGCAGTTGCTCAAGGAGCAAGAAAATGTGGAGCAGCTAGAATTATTGGGATAGATGTCAACCCAAATAAATTAACATTGGCAAGAGAGTTTGGAGTCACAGAGGTAGTTAATTCTAGAAGCATTGGAGATAAATCTGTGAGCCAGGTAATCAATGAGATGACCGATGGGGGTGCAGATTATTGCTTTGAATGTGTTGGACAAAGTTCCTTAATCAAGGAAGCATTTGCATGCTGCAGAAAGGGTTGGGGGAAAACAATTATATTTGGTGTGGAGGAGCAAGCTTCACTTTTAGGTCTCAAATCTATAGATGTCATTTATCAAGGGAAAATGGTGATAGGATGCATATATGGTGGACTTAAGCCTAAATCAGACATTCCTACGCTCCTTCAATGGTACATAGATAAGAAACTACAATTGGATTTATTTATCACACATGAAATTGGGTTTGAAGACATCAACAAAGCTTTCAATTTGTTAAGTGAAGGTCAATGTCTTAGGTGTGTGATTTGGATGACCAAATGAAGCAGCCTCCTGCCTTCTCACTCTTCAAGCAACTTCCACTATTACAAACTCCTTTTGTATTAAAGTTTAAATGTTTCTTTTCTAGAACATTGGAAATGGATGAGAAGCCTCAATGAAATATATGTTGGTTCACTTTCTTGTATTTTGGCTGGGAAATCAAAAGCATTATGTACAGGTTGCACAAATAAAGTTGGGGCAGTTGTCGAGGGGCGGATCTATGAAGGGCTAGGAGCAAGTGCTCCTCAAATTGTGACAGATTTACATATTTGTATATTGATTTTCATTAAATATTAAAAAATTGTAGATATAGTTAATATATATTGTCCATTTAGTAAA 1471 41.33 MEHKSWMASGGKPIRCRAAVCRKAGEALVMEDIMVAPPMTHEVRIRIICTSLCHTDIKYWNMKDPPGIVPRILGHEAVGEVESVGGEVSEVKQGDFVIPTFMAECGECRDCTSSKSNLCSKQPFKLSQGMPRCGTRVGAAWRTANVEKGSTVAIFGLGTVGLAVAQGARKCGAARIIGIDVNPNKLTLAREFGVTEVVNSRSIGDKSVSQVINEMTDGGADYCFECVGQSSLIKEAFACCRKGWGKTIIFGVEEQASLLGLKSIDVIYQGKMVIGCIYGGLKPKSDIPTLLQWYIDKKLQLDLFITHEIGFEDINKAFNLLSEGQCLRCVIWMTK 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 38922465 38936225 + XM_039028817.1 Bhi04g01547 33156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01547 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 135 298 IPR036291 -
Bhi04g01547 335 PANTHER ALCOHOL DEHYDROGENASE 134 332 - -
Bhi04g01547 335 PANTHER ALCOHOL DEHYDROGENASE 9 134 - -
Bhi04g01547 335 Pfam Zinc-binding dehydrogenase 160 293 IPR013149 -
Bhi04g01547 335 SUPERFAMILY GroES-like 284 332 IPR011032 -
Bhi04g01547 335 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Bhi04g01547 335 Pfam Alcohol dehydrogenase GroES-like domain 41 124 IPR013154 -
Bhi04g01547 335 Gene3D - 136 276 - -
Bhi04g01547 335 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 134 332 - -
Bhi04g01547 335 PANTHER ALCOHOL DEHYDROGENASE-LIKE 7 9 134 - -
Bhi04g01547 335 SUPERFAMILY GroES-like 10 126 IPR011032 -
Bhi04g01547 335 SMART PKS_ER_names_mod 25 331 IPR020843 GO:0016491
Bhi04g01547 335 Gene3D - 135 328 - -
Bhi04g01547 335 Gene3D - 19 129 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01547 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101212881 576.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01547 Bhi-Chr4:38922465 Bhi12g02320 Bhi-Chr12:74138354 4.46E-98 dispersed
Bhi04g01546 Bhi-Chr4:38922464 Bhi04g01547 Bhi-Chr4:38922465 1.66E-179 tandem
Bhi04g01547 Bhi-Chr4:38922465 Bhi04g01548 Bhi-Chr4:38922468 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01547 Bhi_Chr04 FPKM 0.0 0.0 0.0 0.0 5.086976 5.161429 4.81244 0.139347 0.166863 0.088452