Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01655 TCGGTTTTTTGCTGCTTGTTATTGGGTTTATTACTGTTTTGATATGTGAATTTGATTAATGGAGCTTGAAATTGTGGAGTGTTTTCGTTTTTCAATCGAATATATGCTTGTGCTTGTGGTTGTGATTGTGATTCTCTCTGTTTTTTATTTTTTTTTCTTTTGTTTTTGTGCTGAGTTTTGATTTCATTTTGTGTTGATCCTCTTGCTGTAGTTATTGAGTCCGTAGTTTGCGGTTGGAGGTTTTTGGTTATCTGAATTGTTTGTTATCGAGTGAGGTATATGCGAATTTTCGGCATGTTGTTTTGAAGAACTACATGCGTTTCGTTTGGTTATGTATTGCTGACTTTTTTTGAGATTTTGATTGACCCCGAGTTTCGCGATCTAAAGGCTGCTGAGGTCGTCTTCTTTTTGTCACTAAAGCGAAGAGTTGCAGTCGGCGTGAATATAAATTCATGTAGAGTATGAATTCTATTATTTCTATCTCTGTTTTTGGTCATAAAACTTAGTTTTAGTTTTGCTTTAGAGACGGAGAAATTTGCTGGAAATTCTTTGGCGAAGATTATATACGCGGATCGAACGTGGCGTTTCTTTCACGCAGAGTTTCAAATCTTAGTGTTAAGGGATATCGTGAATGATCGATTTTCTTGGGATGTTTCACCAGAACTTGAAATTCTGTGGATTGTAAATTCCCTGAAGCTGTCGTTTTTATTTGAACAGTGCTTAGATAAGAAAACAATCCATCCATAAACAAGTGGTTTCAAGCCGACGACACGGGTTTAAATTAATTGCTTTTGTAACTGTGGTGTGTTTATTCCAATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGAAATCTTGAATATTTTTCGGCTCCTCCTGGGGAACAAGAGACAGCTCAGGAGCATGAAGCTGAGGGTGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGAATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACAGATAATTCAAAGCAGCGTCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAACCGGTAAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAACGGCCCTGCAGCAATAGCCAAATATCAGGCTGACCATGCGATTCCTGGGAACAATGACGACTGCAATATAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAAGACACAACCCTTGGGTCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCTCAGAGGCGTTTTCCGTTGGAGAAGGGAGTTTCCCCGCCATGGTGGCCCACCGGAAACGAGCAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCACCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTCAGCGTTCTCACTGCGGTGATTAAGCATATGTCACCTGATATTGCCAAGATTCGCAAGCTTGTTCGCCAGTCTAAGTGTTTGCAAGACAAGATGACTGCAAAGGAAAGTGCTACATGGTTGGCCATTGTGAACCAGGAAGAAGCGTTGGCTAGGAAATTGTATCCTGATAAATGCCCACCCGTGTCGATTTGCGGGGGAGGATCTCTTTTGATCAGCGACACTAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCGAATATCGAAACAGAGGAAAGCAAGCCCCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGAGAAAGACTTATGATGGCACCTGTGGGACCTCAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAACCAAAAGAGGAAGCAGATGACAGATGAGTCGAATACAATAATGAATCCGAAGATATATACTTGCGAGTATTCTCAATGCCCTTACAACAGTCAGCACCTCGGGTTTCTCGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCGTTTAGAAGTGATTCTTCCCATATATTTAACATGCCAAGCTTTCAGACTAACGACGACAAATCGTCTTCTCCTGTTCCTCCATCATTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCGTCTCCACCCTTCAGGGTATCAGGACTTGGACTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAATTCTGGTAATGTCGACATGCGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGACGATAACTTATATTGCCAAGCAGCTATGGTGGGAAATAGTATACCAATTCAGCAGCAGCATGATTATTCTTCTACCAAACTTCCTTTCGAAGAATACAAGGCAGCATTCGATTCTCCGTTTGGCATGTATCCGAACGATAACATCTCCGACTTCAGATTTGGTTCGCCATTTAACTTGGCATCAATTGATTATGCAGCAGTAGACACATCATTGCCCAAACAAGATACACCCTTGTGGTACCTTTGACGCACAAAATATGACAACTCAGCATTGATCGCTCCAATGATCGGAAGTAAATATATTTTCAGAGGGAGGAGGAAGAAAGTCATCTTCATGCCCTAAAGAAGGTGAAATTTCTTCCTATATCTACATGCTAGTTGTTTAATATATATACACATAAATATATATACATATAAAGTGTGTGTGTTGTGTAATTAGAATGGTTCTGCAGCTACATACATTAAGACGGTTTTTACATAATGTAGGATTATATAATATGATGCTACTGAGGTAGTGGTAAAAGTAAAAACAAGTTGAGTCTCACTAATAGAGGAATCTTAAGCTCTCAATTATTAGTGTATTTCTGGGAACTTAAAAAGTTAAAATTAATTACTTGTTGCCTTTGCCCTTTGGAATGTTTATATTTAATATTATTGGGATACTTTCTTAAAAA 3094 41.05 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEGALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNIVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEQWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVSICGGGSLLISDTSDYDVEGVEDEPNIETEESKPHDLNFFNMGAPGSRERLMMAPVGPQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQHLGFLDRTSRNNHQLNCPFRSDSSHIFNMPSFQTNDDKSSSPVPPSFNHPKPPTRLMNPSPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLNSGNVDMRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNSIPIQQQHDYSSTKLPFEEYKAAFDSPFGMYPNDNISDFRFGSPFNLASIDYAAVDTSLPKQDTPLWYL 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 40712738 40716371 - XM_039030766.1 Bhi04g01655 33264

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01655 616 MobiDBLite consensus disorder prediction 24 48 - -
Bhi04g01655 616 Gene3D - 175 308 IPR023278 GO:0003700|GO:0005634
Bhi04g01655 616 Coils Coil 373 393 - -
Bhi04g01655 616 PANTHER ETHYLENE INSENSITIVE 3-LIKE 1 PROTEIN 5 615 - -
Bhi04g01655 616 MobiDBLite consensus disorder prediction 443 459 - -
Bhi04g01655 616 MobiDBLite consensus disorder prediction 460 474 - -
Bhi04g01655 616 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700|GO:0005634
Bhi04g01655 616 MobiDBLite consensus disorder prediction 443 474 - -
Bhi04g01655 616 Pfam Ethylene insensitive 3 51 298 IPR006957 GO:0005634
Bhi04g01655 616 Coils Coil 36 70 - -
Bhi04g01655 616 Gene3D - 83 163 IPR023278 GO:0003700|GO:0005634
Bhi04g01655 616 MobiDBLite consensus disorder prediction 67 94 - -
Bhi04g01655 616 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 615 IPR006957 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01655 K14514 EIN3; ethylene-insensitive protein 3 - csv:101214396 1179.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01653 Bhi-Chr4:40712738 Bhi04g01655 Bhi-Chr4:40712738 0 dispersed
Bhi04g01654 Bhi-Chr4:40712738 Bhi04g01655 Bhi-Chr4:40712738 0 tandem
Bhi04g01655 Bhi-Chr4:40712738 Bhi04g01656 Bhi-Chr4:40712738 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01666 . 2 625 EIL Transcription Factor Family AT2G27050 59.0 1.3e-191 667.2
Bhi04g01652 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi04g01655 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi04g01656 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi04g01653 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi04g01650 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi04g01649 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi04g01654 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi04g01651 . 8 507 EIL Transcription Factor Family AT2G27050 61.7 2.0e-168 590.1
Bhi02g01563 . 44 326 EIL Transcription Factor Family AT2G27050 62.2 7.7e-96 349.0
Bhi02g01563 . 44 577 EIL Transcription Factor Family AT1G73730 54.9 4.1e-147 519.2
Bhi02g01666 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 3.3e-104 376.7
Bhi04g01652 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi04g01655 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi04g01656 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi04g01653 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi04g01650 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi04g01649 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi04g01654 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi04g01651 . 40 335 EIL Transcription Factor Family AT1G73730 61.0 1.1e-102 371.7
Bhi01g02483 . 17 269 EIL Transcription Factor Family AT1G73730 53.8 7.1e-75 279.3
Bhi02g01666 . 3 625 EIL Transcription Factor Family AT3G20770 60.1 1.4e-207 720.3
Bhi04g01652 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi04g01655 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi04g01656 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi04g01653 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi04g01650 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi04g01649 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi04g01654 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi04g01651 . 7 505 EIL Transcription Factor Family AT3G20770 64.0 3.5e-171 599.4
Bhi02g01563 . 44 292 EIL Transcription Factor Family AT3G20770 69.3 3.0e-98 357.1
Bhi02g01563 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 9.0e-70 262.3
Bhi01g02483 . 12 348 EIL Transcription Factor Family AT5G10120 58.0 5.2e-103 372.5
Bhi02g01563 . 44 290 EIL Transcription Factor Family AT5G10120 55.2 1.3e-72 271.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
988 PF04873 EIN3 5.00E-132 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01655 Bhi_Chr04 FPKM 6.272489 6.592799 0.0 0.0 0.0 0.148558 0.0 0.0 0.0 0.083728