Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01749 TGTCATATCTTCCCTCCTCTCTCTCCATCTTTCTCTCTCTTCTTCTGAACAAAAACACAACCGCTGAAAAACAATTCAGTGAAAATTAAACAAATATTTAAAATCACAATCTCAGTTTTTACAGTGATTTGTTGATTCGGAAGTTGCTTATTCAAGAGCTCCTTCAACTGAAAAACTTCCAGAAATCAGGTTTCTGCGTATTTTTCTTGTAACTTTGAAGACGTTGGTGGCTTTGGCACAGATTCGAAAGGCAGGAAAAATTGGAAGTATTGAGCTGGTTATATCATAGGTCATAGTTGTAAATTTTCTTTGAAGGAGCTGTCCCAGTTGCCTTAATTTTCATTTTATTTTTGTTTCAATTTTGGTAATCGAAACTGGGTGCCGATTTGGGATGTTGAGTTACGATATTTTGATTCTTGACTGGTAGCGGTGTGTTGAATGTTAAAAAGCTTGAGGTTCATCTTTTGGATTGTTAGTGAGAGGCTGGCGAAACCTGTGGACTGCTCCCAGTGAATATTTAAGAAGTAGACTATTTGTTGTTCTCTATGATGGCTAGTTCATCTGAAAGGTGGATAGATCGTCTCCAGTTTTCGTCTTTGTTTTGGACTCCGCCTCAAGACGAGCAACAAAGAAAAGCTGAAATCACTACATATGTGGAGTGCTTGGGTCAGTTCACATCGGAACAATTCCCGGAGGATATTGCAGAGTTAATACGTAGTCATTATCCATGGAAGGAAAAGCGCCTTATTGATGATGTCTTGGCAACTTTTGTTCTTCATCATCCGGAGCATGGGCATGCTGTTATTCTTCCAATTATATCTTGTATTATTGATGGTACTATGGCGTATTGCAAGAGCGGTTCTCCCTTTTCGTCTTTCATATCCTTATTCTGCCCCAACACAGAACATGATTATTCTGAACAGTGGGCTCTGGCATGTGGTGAGATATTGAGAATTTTGACTCATTATAATCGTCCCATATATAAGACGGAACAACAAAATATGGAAGGAGAAAGAAGTGGTTGTGATAACCATACAACAACCGGTGACTCAAGTGATGTGCCACCCAGCCAGATGCCTTTGAATCAGGATAGGAAGCCTTTAAGGCCTCTATCTCCATGGATTACTGACATATTGCTTGCGGCGCCTCTAGGTATCAGAAGTGACTACTTCCGTTGGTGTAGTGGCGTTATGGGAAAATATGCAGCTGGAGAACTAAAGCCGCCTACAACTGCTACATCTCGTGGGTCTGGAAAGCATCCGCAACTTGTACCGTCAACTCCAAGATGGGCTGTTGCTAATGGTGCTGGTGTTATATTAAGTGTATGTGATGAAGAAGTTGCTAGATATGAGACTGCCACGTTGACGGCAGCAGCTGTTCCTGCACTTCTACTTCCTCCACCAACTACAGCTTTAGACGAGCATCTAGTTGCTGGGCTACCTGCTTTGGAGCCTTATGCACGTTTATTTCACAGGTACTATGCTATTGCTACTCCAAGTGCTACTCAAAGACTTCTTCTTGGGCTTTTAGAAGCACCTCCTTCATGGGCTCCTGATGCACTTGATGCAGCTGTTCAGCTTGTAGAACTCCTTCGGGCTGCTGAAGACTATGCATCCAGAATAAGACTTCCTAGGAACTGGATGCATTTGCACTTTTTACGTGCCATAGGAACTGCAATGTCAATGCGAGTAGGTATTGCTGCTGACGCTGCAGCAGCACTACTTTTCCGGATACTCTCCCAACCTGCATTGCTTTTTCCTCCTTTGAGGCAAGTCGAGGGAGCTGAAATTCAACATGAACCATTGGGTGATTATATATCATCCTACCAGAGACAGATAGAAGTTCCAGCAGCAGAAGCAACAATTGAAGCAACTGCCCAAGGGATTGCATCCATGCTTTGTGCCCATGGCCTAGAAGTTGAATGGAGAATCTGTACCATTTGGGAAGCTGCTTATGGCTTGATTCCGTTAAGTTCTTCTGCAGTTGATCTTCCAGAAATTGTCGTCGCAACACCGCTACAACCTCCCTTATTATCTTGGAATTTGTACATACCACTTCTTAAGGTCCTTGAATATCTTCCTCGTGGCAGTCCATCTGAAGCATGTCTAATGAAGATATTTGTTGCTACTGTAGAAGCAATTCTTCAAAGAGCATTTCCATCCGAGTCTTCAACAGAGCGTACAAGGAAACTCAAATATCTTTCAGGAAATGGTTATGCCTCTAAGAACCTTTCTGTATCAGAGCTTCGGATGATGGTTCACTCTCTTTTCTTAGAATCATGTGCTTCTGAAGAGCTTGCTTCACGTTTACTTTTTATTGTGTTAACTGTTTGCGTTAGTCACGAAGCTCAATCAAACGGACGAAAGAAAAGAAGAAGCGATAGTAGTAATTTTCAGGAAGAAAGGGTTGAGCCAAGTCAAGACATGTCCAGAGAAAGAAGAGAAACAAAAAGTAGGATGAATAAACAAGGACCTGTATCAGCTTTTGATTCTTATGTTCTTGCTGCTGTTTGTGCTCTAGCTTGTGAACTGCAACTATTTCCATTGATGTCACGGGGAAGGAAACGTTTGAATTTTAAAAGTTCGCAAGATGTGGCCAAGTTGGTCAAAATAAATGGATCTTTTGAACTTCAGAGTAGCATTGACTCAGCCATTCGTCATACTCATAGGATTTTATCAATTTTGGAGGCTCTCTTTTCTCTGAAGCCTTCTTCTCTTGGAACATCTTGGAGTTACAGTTCAAATGAAATAGTTGCTGCAGCTATGGTTGCTGCTCATGTTTCAGAACTATTTCGACGGTCAAGAGCTTGCATGCATGCTCTTTCTGTTTTGATGCGGTGCAAGTGGGACGAAGAAATTTACACCCGGGCTTCATCACTGTACAACCTTATTGATATTCACAGCAAAGCTGTCGCATCTATTGTCAATAGGGCTGAACCATTAGAAGTGCACTTAGTGTCTGCACCACTTTCAGAGTACTCTCGTGTATCTTCAGCAGGGCGAAAGCCAACTCAACATGATAACCATGTCTACTTCGAGACTGGACAGCAATCTATCCCGAAATGTGAAGAGTCATGCCATGTTATGGCGAAACTTTCATTTGAAAGAGCTCCAGATTCAAATGTTGACTTGGAAAATACGTTGGGCAAACGAATAGCAAGTTTCCAGTTAGATGCTTCTGAATTAGCGAATTTTCTCACAATTGATAGACATATAGGATTCAATGGATGTGCACAAATTCTTTTAAGATCAGTGCTGGCAGAGAAGCAGGAGTTATGTTTCTCTGTCGTTTCACTTTTATGGCACAAGTTAATTGCGACACCCGAAATTCAACCTAGCGCGGAGGGGACATCTGCCCAGCAAGGATGGAGACAGGTAGTTGATGCTCTATGCAATGTTGTTTCTGCATCCCCAGCAAAAGCAGCTGCAGCTGTTGTGCTCCAGGCTGATAGAGAATTCCAGCCTTGGATTGCTAAAGATGATACCCAAGGGCAAAAGATGTGGAGAATCAATCAGCGGATCATCAAATTGATTGTTGAACTCATGAGAAATCACGATAAACCGGAATCGCTAGTAACTTTAGCAAGCGCATCTGACCTTCTTTTGCGTGCTACAGATGGAATGCTGGTGGATGGAGAAGCTTGCACTTTGCCCCAGCTGGAGCTTCTAGAAGCAACAGCTCGAGCAGTTCGGCCTGTGTTGGAGTGGGGAGAATCTGGGTTGTCCATCGCGGATGGTCTTGCCAACCTTTTGAAGTGTCGTCTGCCAGCTACAGTTCGGTGTCTTTCTCATCCAAGTGCACATGTCCGTACTTTGAGTACATCAGTTCTTCGCGATATTTTGCAAACTGGTTCATTCGTCTGTAGATCTACACCAAAGAACATAAATGGTGTCCACAGCCCATCCTTTCAATACCTCAACAGGGAAGCAATTAACTGGAAAGATGACCTTGAAAAGTGCTTAACTTGGGAAGCTCATAGTCGACTCGTAACCGGAATGCCCATTGAGGTTCTTCATGTTGCTGCCAAGGAATTAGGCTGCTCTATTTCTTTGTGAGATTAACTAAGGCATTGGCAACCAATTTACTCGGACGATAGGCGAGCGGCTTACGTAGAGAAATAGTAAGTATTGATTGATTCGAAACAAGCAGCTTCGTATTAGCTACTCCTAAGTTTTCTCATTCTGTTTGAGAAATAAAACCTCATAATGTCATAATAGTTCCTTATTCTGGCCAGAGGTTGGTACTTTTTCATATGATGAGATGATCATGTACAGTAACACCATGACAGGGCAACCAGCTTTCTCACCTATCTTGTTATCTTGTTGTATCTGTTTTGTATGTTGTAAAACCCTGTGTTATTTCAGTGGTTGGTCTACCACATGTAATTTGGATCTTCTTACATCAAATGAATTAGAGTAGCTTGAACTTGGCAGAGCTCCATCTACTATTATTTCAA 4456 42.21 MMASSSERWIDRLQFSSLFWTPPQDEQQRKAEITTYVECLGQFTSEQFPEDIAELIRSHYPWKEKRLIDDVLATFVLHHPEHGHAVILPIISCIIDGTMAYCKSGSPFSSFISLFCPNTEHDYSEQWALACGEILRILTHYNRPIYKTEQQNMEGERSGCDNHTTTGDSSDVPPSQMPLNQDRKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTTATSRGSGKHPQLVPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASRIRLPRNWMHLHFLRAIGTAMSMRVGIAADAAAALLFRILSQPALLFPPLRQVEGAEIQHEPLGDYISSYQRQIEVPAAEATIEATAQGIASMLCAHGLEVEWRICTIWEAAYGLIPLSSSAVDLPEIVVATPLQPPLLSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAILQRAFPSESSTERTRKLKYLSGNGYASKNLSVSELRMMVHSLFLESCASEELASRLLFIVLTVCVSHEAQSNGRKKRRSDSSNFQEERVEPSQDMSRERRETKSRMNKQGPVSAFDSYVLAAVCALACELQLFPLMSRGRKRLNFKSSQDVAKLVKINGSFELQSSIDSAIRHTHRILSILEALFSLKPSSLGTSWSYSSNEIVAAAMVAAHVSELFRRSRACMHALSVLMRCKWDEEIYTRASSLYNLIDIHSKAVASIVNRAEPLEVHLVSAPLSEYSRVSSAGRKPTQHDNHVYFETGQQSIPKCEESCHVMAKLSFERAPDSNVDLENTLGKRIASFQLDASELANFLTIDRHIGFNGCAQILLRSVLAEKQELCFSVVSLLWHKLIATPEIQPSAEGTSAQQGWRQVVDALCNVVSASPAKAAAAVVLQADREFQPWIAKDDTQGQKMWRINQRIIKLIVELMRNHDKPESLVTLASASDLLLRATDGMLVDGEACTLPQLELLEATARAVRPVLEWGESGLSIADGLANLLKCRLPATVRCLSHPSAHVRTLSTSVLRDILQTGSFVCRSTPKNINGVHSPSFQYLNREAINWKDDLEKCLTWEAHSRLVTGMPIEVLHVAAKELGCSISL 1169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 42536334 42545592 + XM_039029590.1 Bhi04g01749 33358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01749 1169 MobiDBLite consensus disorder prediction 223 244 - -
Bhi04g01749 1169 MobiDBLite consensus disorder prediction 604 638 - -
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 5 23 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 123 147 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 183 203 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 203 221 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 232 250 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 250 271 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 277 295 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 301 321 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 326 345 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 345 365 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 377 399 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 449 472 IPR026211 GO:2000028
Bhi04g01749 1169 PRINTS Protein GIGANTEA signature 509 530 IPR026211 GO:2000028
Bhi04g01749 1169 PANTHER PROTEIN GIGANTEA 2 1168 IPR026211 GO:2000028
Bhi04g01749 1169 MobiDBLite consensus disorder prediction 604 640 - -
Bhi04g01749 1169 MobiDBLite consensus disorder prediction 151 184 - -
Bhi04g01749 1169 MobiDBLite consensus disorder prediction 151 177 - -
Bhi04g01749 1169 PANTHER PROTEIN GIGANTEA-LIKE ISOFORM X1 2 1168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01749 K12124 GI; GIGANTEA - csv:101220984 2171.74
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi04g01749 Bhi09g01546 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01749 Bhi-Chr4:42536334 Bhi09g01543 Bhi-Chr9:41542168 0 dispersed
Bhi04g01748 Bhi-Chr4:42536334 Bhi04g01749 Bhi-Chr4:42536334 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1317 . . . . . . . . . . . . . . Sed03g0506 . . Bhi04g01749 Tan11g1105 . . . . . Cla08g00749 Cam08g1176 Cec08g0766 Cco08g0874 Clacu08g0882 . Cre08g0684 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi09g01546 . . . . . . . . . . . . . Lsi08g00572 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001222 2 6 3 2 3 2 3 2 2 2 2 2 3 1 2 2 2 3 3 2 2 2 2 2 1 2 2 8 6 1 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01749 Bhi_Chr04 FPKM 10.151143 10.932397 3.839808 3.690502 9.76195 8.984971 8.470116 0.902571 0.332805 0.548285