Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01773 TATTATTTAAGTATAGACATACACAGTTCATGGGTTCGATTTAAGAGAAAGGAATTGGTGAAGAAGTCCGGCCTTGGAGAGAGAGAGAGCGCAAAAAGTTGAGGCTCTTGCTCTGCTCTGGGTTCCCTTCCAAGCTAAAGAAAAAATGATGGATTTCTGGTCATTCTTTAAACGCCTTTTTGTTTGTACTCTCTCCTCAAAGATACATTAACACAACTAGGCCTTTTGTAAAACCGGTTAAATGTCATTCCGTAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGTCTGGAAATTCCAGGGGTAAATCTCATGGACCAGTTCATGAGTTTAATGATGAGCCTCTGCTAATTCAGACTAGCCATTGGGCTAGCCTTCCACCCGAATTATTATGTGATGTGGTCCGAAGACTGGAGGCGAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAGAGAAATGGTCAAAAGCCCCGAGTTGTCTGGAAAAATTACCTTCCCAATTGCCTTGAAGCAGCCTGGGCCACGCGATGGCACTATTCAATGCTTTATCAAGAGGAACAAATCTAATTTAACCTATCATCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGAAAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACGGAGTATGTTATATCATTGGCTGCGGACGATATATCAAGATCGAGCAACGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATTATATATGATACACAACCTCCTTACAACAACAACCAAATTCCGACCCTTGGGCGAAGTCGAAGATTCTACTCCAAAAAGGTCTCACCGAAGGTCCCAGCTGGAAGCTACAGCATTGCACAAATTGCATACGAGTTGAATGTATTAGGTACAAGGGGACCCCGGAGAATGAACTGCACCATGTACTCAATCCCCACTTCATCTCTTGAGCCAGGTTGCTCGGTTCCAGGCCAGCCTGAGCTCAATCCTCGCCCTCTCGAAGACTCATTTCGTAGCATCTCATTCTCCAAGTCAATTGATCATTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGATGTTGCGGGAATGCTTGTTGACGAAGAGGGTGAGGTGAAGGATCGACCCTTGATTCTCCGGAACAAGGCACCTAGATGGCACGAGCAGTTGCAGTGTTGGTGTCTCAATTTTCGTGGGAGGGTGACAGTTGCATCTGTAAAGAACTTTCAGCTAATTGCTGCAACCTCACCTGCTGCAGAAGCCCCTGTACCGTCGCAGCCACCTCCCCAGCCCGCCCAACCTACCCATTCTGACCATGACAAGATCATTCTTCAGTTTGGAAAGGTCGGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGTCTCAGCAGCTTTGACACTAAATTGGCATGTGAATAGACAAGAAGAAAGACACCCAACAGAAAACATGAAACAGGAAAATGAACAATTCAGATAATGGTAAGAAATGAAGAAAAAAATTTAGTTGGCAATTAGTGGTTTTCCTTAGTGTTTTTATAGGGTGATGTTTGAATGCAGTTGTATTAAATTAGAAACTCTCACTCACTGCAAAGAATTAGAACAATTTCTTTGAACCTCACTCTCATCATTCATGGAGATTACCTTC 1766 43.71 MSFRSILRDVRDGFGSLSRRSFEVRLSGNSRGKSHGPVHEFNDEPLLIQTSHWASLPPELLCDVVRRLEASENTWPSRRNVVACAAVCRSWRDMCREMVKSPELSGKITFPIALKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSNGYIGKLRSNFLGTKFIIYDTQPPYNNNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMNCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDVAGMLVDEEGEVKDRPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVPSQPPPQPAQPTHSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 43071404 43075749 - XM_039029607.1 Bhi04g01773 33382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01773 432 Pfam F-box domain 53 99 IPR001810 GO:0005515
Bhi04g01773 432 Gene3D - 48 103 - -
Bhi04g01773 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bhi04g01773 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bhi04g01773 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bhi04g01773 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Bhi04g01773 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
Bhi04g01773 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Bhi04g01773 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Bhi04g01773 432 Pfam Tub family 114 427 IPR000007 -
Bhi04g01773 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Bhi04g01773 432 SUPERFAMILY F-box domain 48 96 IPR036047 GO:0005515
Bhi04g01773 432 PANTHER TUBBY-RELATED 1 432 - -
Bhi04g01773 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 432 - -
Bhi04g01773 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Bhi04g01773 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Bhi04g01773 432 MobiDBLite consensus disorder prediction 368 388 - -
Bhi04g01773 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01773 Bhi-Chr4:43071404 Bhi04g02131 Bhi-Chr4:57228311 0 dispersed
Bhi04g01773 Bhi-Chr4:43071404 Bhi04g01774 Bhi-Chr4:43071404 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1001 PF01167 Tub 9.10E-116 CL0395 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01773 K19600 - csv:101203074 849.351