Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01823 ATGCCTCGTCGCAGGGACGACGATGACGACGACATTGACGCCGATGAAGAAGAGTATGAGGAGGAGATGGAACAGCCTCTCGACGAGGAGGAGGAGGAGGAGGAAGATCGTTCGAGTAGGAAGCGTCGGAGATCAGATTTCATAGACGACGTTGCGGAGGAAGATGAGGACGAAGAGGAAGAAGAAGAGGATGAGGAGGAGGAGGATTTTGGTGGCGGTGGTCGGAGGCGGCGTGCCAAGAGGCCTAGCGGTTCTCAGTTTTTGGATATTGAGGCTGAGGTCGATAGCGATGATGATGAAGATGAGGATGAAGGAGAGGACGATTTCATAGTTGATAATGTAGCTGATATACCCGATGACGATGATAATAGAAGGATGCATCGCCGCCCGTTGCTACCACGGGAGGATGAACAAGAGGATGTTGAAGCACTTGAAAGAAGGATTCAAGCGAGATATGCAAGGTCAAATCATATGGAATATGACGAGGAGACGACAGAAGTGGAGCAGCAAGCCCTTTTACCTTCTGTAAGGGATCCAAAATTGTGGATGGTTAAATGCGCGATTGGCCGTGAACGGGAGGCTGCTGTTTGTCTAATGCAAAAATGCATCGATAGAGGGCCTGAAATGCAAATAAGATCTGCGGTTGCTCTTGACCATTTGAAGAACTTTATATATATTGAGGCTGACAAAGAAGCCCATGTTAGAGAGGCTTGTAAAGGTCTACGCAACATATATGCTCAAAAAATAACGCTTGTTCCAATTAAAGAGATGACTGATGTTCTCTCTGTTGAAAGCAAAGCAATTGATCTTTCTAGAGATACATGGGTTAGGATGAAGATTGGGACATATAAGGGGGATCTTGCCAAGGTGGTGGATGTTGATAATGTGCGACAGAGGGTTACTGTGAAACTGATTCCACGGATAGACCTACAGGCTCTTGCAAATAAATTGGAAGGGAGAGAAGTTGCTAAGAAGAAGGCATTTGTTCCTCCACCTCGTTTTATGAATATTGATGAAGCTAGAGAGTTGCATATCCGTGTAGAGCGCAGACGTGATCCTATTACTGGAGAATACTTTGAGAATATTGGTGGCATGTTTTTCAAGGATGGTTTCTTGTATAAAACAGTGTCCATGAAGTCAATAAGTGCCCAAAACATAAAGCCGACTTTTGATGAACTTGAAAAATTTCGAAAGCCTGGAGAAAATGGAGATGGGGATATTGCTAGTTTGTCTACCTTGTTTGCTAACCGAAAGAAAGGGCACTTTATGAAGGGTGATGCTGTCATTGTTGTTAAGGGGGATCTCAAGAATTTGAAAGGATGGGTGGAGAAAGTAGAGGAGGAGAATGTCCACATCAGACCAGAAATGAAGGGCCTTCCCAAAACTCTTGCTGTGAATGAAAGAGAGCTTTGCAAGTACTTTGAGCCTGGGAATCATGTAAAAGTTGTATCGGGCACTCAGGAGGGGGCTACTGGTATGGTTGTGAAGGTGGATCAGCATGTGCTTATTATACTATCTGATACAACCAAGGAACATATTCGGGTATTTGCTGATGATGTTGTTGAGAGCTCCGAGGTAACAACTGGTGTGACAAGAATTGGGGATTATGAACTTCATGATCTTGTGTTACTGGATAATATGAGCTTTGGCGTAATTATTCGAGTAGAAACTGAGGCTTTTCAGATTCTTAAAGGTACTCCTGATAGGCCTGAGGTTGATATTGTGAAGTTGAGGGAAATAAAAAGTAAGATCGACAAGAAAATTAGCGTTCAAGATCGGTTCAATAACACAATTTCCTCCAAGGATGTAGTGAGGATTCTTGAAGGTCCTTGTAAGGGAAAACAAGGTCCGGTGGAGCACATATACAGAGGAATCCTGTTTATTTATGATCGCCATCACTTGGAACATGCAGGCTTTATATGTGTTAAATCACAGTCTTGTGTTGTTGTGGGTGGATCTCGAACTAATGGAAATAGAAATGGTAATTCATACTCTAGGTTTGCTGGCCTTGCGACCCCACCTCGTTTTCCTCAGTCACCTAAGAGATTTCCCCGAGGAGGCCCCCCCAACGATAATGGAGGAAGACATAGAGGTGGGAGAGGGCATCATGATGGGTTGGTTGGATCAACCGTAAAAGTTCGACAGGGACCTTACAAGGGTTACCGTGGGCGTGTCGTTGAAATAAAAGGCCAACTGGTTCGTGTGGAGCTTGAATCTCAAATGAAAGTTGTCACAGTTGACCGCAATTTCATCTCAGATAATGTGGCCGTTTCAACCCCCCATCGTGATGCATCTAGATATGGTATGGGAAGTGAAACTCCCATGCATCCTTCTCGAACTCCCCTGCATCCATACATGACCCCGATGAGAGATATTGGAACAACACCAATTCATGATGGCATGAGAACACCTATGCGAGATCGAGCATGGAATCCCTATGCACCCATGAGTCCGTCAAGGGACAACTGGGAGGACGGGAACCCTGCAACTTGGGGAGCAAGTCCACAGTATCAGCCAGGAAGCCCTCCTTCACGAACATACGAAGCTCCAACTCCTGGTTCTGGTTGGGCAAACACTCCTGGTGGCAGCTACAGTGATGCTGGTACCCCCCGTGATAGTGGTTCAGCATATGCAAATGCTCCGAGCCCATACTTGCCTTCAACTCCTGGTGGACAGCCCATGACACCAAATTCAGCCTCCTATCTTCCTGGCACTCCTGGCGGGCAACCAATGACACCAGGCACAGGTGGTCTGGATATGATGTCTCCTGTTATAGGTGGTGATACCGAAGGACCGTGGTACATGCCAGACATATTGGTCAATTACCGGAGGTCAGGAGATGATCCCATCATGGGAGTAATCCGTGAGGTGCTTCCGGATGGATCGTGTAGGATAGGGCTTGGATCAAGTGGAAATGGTGAAACGGTAACAGCCCCTTCTAGCGAAGTAGAAGTGATTGTTCCTAGGAAGTCAGACAAGATCAAGATAATGGGCGGTGCACTCCGTGGTGCCACTGGCAAGTTGATCGGTGTAGACGGCACTGATGGAATTGTGAAGGTAGACGACACTCTTGATGTTAAGATTTTGGATTTAGTTATTCTTGCTAAACTTGCTCAACCGTAATTTTTATTCCTAATAAATGAGAATCATATTTGTATACTACATAGTCTAGTGTAAGTTTTTTTTTTTTTTTCAATTATAAATGAATTTCAGTTCATGTTCATGTGCAACA 3232 45.2 MPRRRDDDDDDIDADEEEYEEEMEQPLDEEEEEEEDRSSRKRRRSDFIDDVAEEDEDEEEEEEDEEEEDFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEDEDEGEDDFIVDNVADIPDDDDNRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPKLWMVKCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNFIYIEADKEAHVREACKGLRNIYAQKITLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFENIGGMFFKDGFLYKTVSMKSISAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHVKVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHDLVLLDNMSFGVIIRVETEAFQILKGTPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISSKDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICVKSQSCVVVGGSRTNGNRNGNSYSRFAGLATPPRFPQSPKRFPRGGPPNDNGGRHRGGRGHHDGLVGSTVKVRQGPYKGYRGRVVEIKGQLVRVELESQMKVVTVDRNFISDNVAVSTPHRDASRYGMGSETPMHPSRTPLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNWEDGNPATWGASPQYQPGSPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDSGSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVIGGDTEGPWYMPDILVNYRRSGDDPIMGVIREVLPDGSCRIGLGSSGNGETVTAPSSEVEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1040
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 44731632 44742202 - XM_039029561.1 Bhi04g01823 33432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01823 1040 CDD KOW_Spt5_5 704 752 IPR041978 -
Bhi04g01823 1040 Gene3D - 476 525 IPR014722 -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 117 141 - -
Bhi04g01823 1040 PIRSF Spt5 3 1040 IPR017071 GO:0006357|GO:0032784
Bhi04g01823 1040 Coils Coil 16 36 - -
Bhi04g01823 1040 SMART nusgn_4 178 264 IPR006645 GO:0140673
Bhi04g01823 1040 CDD KOW_Spt5_4 601 643 IPR041977 -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 1 141 - -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 660 708 - -
Bhi04g01823 1040 Gene3D - 160 262 IPR036735 GO:0006355
Bhi04g01823 1040 CDD KOW_Spt5_6 981 1038 IPR041980 -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 891 905 - -
Bhi04g01823 1040 CDD NGN_Euk 180 262 IPR039385 -
Bhi04g01823 1040 Gene3D - 416 473 IPR014722 -
Bhi04g01823 1040 Coils Coil 48 69 - -
Bhi04g01823 1040 Pfam Early transcription elongation factor of RNA pol II, NGN section 180 261 IPR005100 -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 9 34 - -
Bhi04g01823 1040 Pfam Spt5 transcription elongation factor, acidic N-terminal 87 174 IPR022581 -
Bhi04g01823 1040 ProSitePatterns Ribosomal protein L24 signature. 425 442 IPR005825 GO:0003735|GO:0005840|GO:0006412
Bhi04g01823 1040 CDD KOW_Spt5_3 473 523 IPR041976 -
Bhi04g01823 1040 Pfam KOW motif 476 503 IPR005824 -
Bhi04g01823 1040 Pfam KOW motif 707 737 IPR005824 -
Bhi04g01823 1040 SMART kow_9 987 1014 IPR005824 -
Bhi04g01823 1040 SMART kow_9 421 448 IPR005824 -
Bhi04g01823 1040 SMART kow_9 597 624 IPR005824 -
Bhi04g01823 1040 SMART kow_9 704 731 IPR005824 -
Bhi04g01823 1040 SMART kow_9 473 500 IPR005824 -
Bhi04g01823 1040 SMART kow_9 269 296 IPR005824 -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 50 69 - -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 91 116 - -
Bhi04g01823 1040 Gene3D - 269 311 IPR014722 -
Bhi04g01823 1040 PANTHER SUPPRESSOR OF TY 5 27 1038 IPR039659 GO:0006357|GO:0032784
Bhi04g01823 1040 Coils Coil 134 154 - -
Bhi04g01823 1040 CDD KOW_Spt5_1 273 310 IPR041973 -
Bhi04g01823 1040 Gene3D - 690 754 IPR014722 -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 35 49 - -
Bhi04g01823 1040 SUPERFAMILY Translation proteins SH3-like domain 465 524 IPR008991 -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 761 915 - -
Bhi04g01823 1040 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 27 1038 - -
Bhi04g01823 1040 MobiDBLite consensus disorder prediction 829 882 - -
Bhi04g01823 1040 CDD KOW_Spt5_2 422 472 IPR041975 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01823 K15172 SUPT5H, SPT5; transcription elongation factor SPT5 - csv:101204562 1858.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01309 Bhi-Chr4:33225039 Bhi04g01823 Bhi-Chr4:44731632 1.19E-30 dispersed
Bhi04g01310 Bhi-Chr4:33225039 Bhi04g01823 Bhi-Chr4:44731632 2.34E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1207 Blo01g01326 . Bda01g00691 . Bpe02g00614 . . Bma01g02111 Cmo04g02539 Cmo15g00634 . . . . Sed01g2883 . Cpe13g00663 Bhi04g01823 Tan11g1195 Cmetu03g0776 . Hepe02g2759 . Lcy10g1309 Cla08g00661 Cam08g1091 Cec08g0676 Cco08g0785 Clacu08g0796 . Cre08g0599 . . . . . . . Cme03g00404 . . . . . . . . . . . . . Car04g02336 Car15g00576 Cpe01g02098 . . . . . . . . . . . . . . . Lsi08g00519 . Chy03g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005509 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01823 Bhi_Chr04 FPKM 11.79742 11.75636 16.83861 17.117123 9.667403 9.771689 9.729156 20.110125 20.128239 20.287481