Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01837 CTTGAAGGTTGCAGTGCAGCTTTTTGAAGAAATCAATCAATGGGATCGAGCTCTTTGTAATGTCATGATCTCAAGCTTTGCATGGCATGGTCGATGGAGGGATTCCATGTGGCTTTTTGTGTATGCCTTAAGGGACAACCTCGGACCAATTGAGATTACACTGAGCAGTGTGCTGAGCTCCATTTCAGTTTTCACACCTGTGGAGTTGGGCAGTCAAATTCATAATTTGGTTCTTAAGTTGGGTTTTGAGTCTGATGCCATTGTCACTAGTTCGCTGGTAGACATGTATGCTAAAGTTGGATCAATTGATAGTGCCATGAAAGTCTTTGTCGATATGCCCGTTAGAGATTTAATATCTTGGAACACTATGATTATGGGTCTGGTTAACAATGGTAAATACTTTGATGCCCTACACACTTTTAATAAATTGGTCAAGGAAGGTGTACTTGCAGATAGGATAACACTAGCTGGAGTCTTATTAGCTTGCAGTTATGCTGGTTTTGTCGAGGAAGGGCTAGTCATCTTCTCTACAATGACATATGAACATGGAATTGTGCCAAGGAATGAACATTATTCTTGCGTGGTGAACTTGCTGAGTTGGGCTGGTAAATTTGAAGAAGCAGTGAATATTATTAAAACAACACCATGCCAACCTACTTCTACATTTTGGACATCACTTCTTGGTGTCTGTGCAATTCATGGAGACCTGAAAGTCATTGAAAGAGTTGCAGAGAGGGTGATGAAGCTGGAACCGCAATCATCCCTACCGTATTCGGTGCTGGCTCAAGCGTATGCAATGAGAGGTCGATGGGAAAGCACCGTTCGTGTCAGGAAGACCTGGGAGAATATAGCTGCACAAAAGGTGAAGGGTTGCAGCTGGATTGTGACAAAAGATTATGCATATGCCTTTGAGGATGACCAATTACAACATCTGTGGAGAGAAATTTCAGTGTTGGAATTAATTATCTGGGAGGTCGAATATGGAATTGTCTATGATCAACGTATTTAAGGAAACAATACAACGAAAATATTTTGTGATATTGATGATATGAACCATAAACCTCAAATTTATCGAGTTCTTAATAGCCAAGGGCCAACATCTGAAGCTTTGAGGTTGTGGATTCTCCAAGGATCACACTGAGCATGAGCTCCAGACTATCCTTAGCAACCTGTGGATAAGAGGTGATACACGTATTGTTCTAGGAATCCTTCATTGAATGCCTCATCCAAATAAGTTCTTGCTGGATTTGAAGATATTGTTTCATTTTTTGCAGCAAATCTGATGTTCTGTTAACAGACTGCAGCTTTGTTCTGATGTTTACCATCTATTCTCTCTGCATTTGTGTGGGTTTGCAATGGTGCGATACCAATTGAAAGTATTCCCGGGGATGTTTTCTGGAACTAACCTTTGTGCAATGGAGGATGAAGTTTGGAAGAAAACTGATGCATACATATTAATGCTTCAGGAGACTGTGGAGAGATGTGAAGAAGAAGGCGTAATGCCTCCCTCCAACTCCTTATTGTCCATTTTTATCACTATGGGCACCTGCTACTTTAAAAAATTACATCATCCATGATTCTTTTTTGAGTTTTAATTTTTCAAGCTTGCTCACCTTAACCCTATCTTAACTTTTATCTCATTGAAAAATCTAAGTTTTATGTTGAATTAACGATGGAAGTTATTTCCCATTACAGTATCCAATTTTTTCTGTTGGCCATTCAAGAGCAATTCATGTTCAAGAGCTTATTGTGAAGAAAATAGGGTATTGAGCTATCCAGCCTATTGAATCTTATAACCCTCATCAAGTCAAGTCACTCACTAACTAAGCTGCAAATACGCGCTAAACAGTGAAATTATAGAGCGAGTTTGTCGAGGTACTATAATGGGTTCGAAGCATGCTACTAGGAGAAAGATAAGCTATGTTCTGTAATTCCAACGCTACAACAAACTCAGTGATACCTTGCATTTCTGCTTGAAGGGTGAGCAGTATTAGTTTTAGTTGCCTTTGTTGATATATAGTAAAACCCACCGATTATTTATTCTTTGACATAAACATTTTTCAGATGCATAATTATGTGTTCTGATCGAAAATTCGAGGAGAACTGATCATAACAATTGACAAATTCTTTGCTGATTGAAAGGTCACTTTGATGCTAATAAACTTTGTAGTTTGTAGTTTATTTTGGCTTTTAGCTTACTCCTGTTGGCGAGGGATAGGATAATTATAGAATTTGTAGAAAGGGATAGGATAAATTACTAGAATTTGTAGAACTGATACTATTGTATGGGAAAGATCGTATTGTATTCAGAAAATCTTATGGAAGTGCATCTATATCCCTCCTCCATTCCATGCAGTTTAGGTAAGATAATTGGTTGATTTTTCTAAATGTTTTATTTATTCTAGGGTCTTTGTAAGCTCTTGTTCCTCTCATAGGTTTAATTACTAATAGTAGAAAAGACCTAATCGGTTTTTGTGTTACTGGGGCAGAAAAACTAGAGCATTAATTGAGGGATGGTGAGCACCGAGCTGACTGTTCTCTCCATCAAAAGCTTCTTGTTCCAGAGTAGCTCTTAGGATAGCTCATCTGCACAAAGCAACGCAACTGGTTTGTCTAGTAGCATTTCTACAGATCAAGCATTGGATGCTGAGTCATCTTCTTGGGATGAAAAAATAGGTTAGGAAGCTGTTGCATATTTGCATATATTTATATTGTGTGCCCAAACCACCGTTCAGGAAAAAGTGGGGTTCTGGAGAGGGGGGGAGGTGTCTAAGAGCATATGCTGATAGTTATCACATCATTCAACCTCATCTGGAGAATTTTGTTTGGTCGTTTGCCATTTTTATTTCTCTACTGTGAGATGGACATGAGCTTCCACCTGCTATTCAATATGTCAAAAATGCTGTAATGCATTTCCTTCTCAATTCAGTTGACCTGTTAGAAGTAAAAAGCCAGGCAATAAAAAGCAAAGACTGAGAGAATAAGAAAGTGCCTGACACTGGTTTGTCAAAGAAATGAATGACAAAGAACATGGATGCTTAAGTTTTAACACACAATAAGCGTTAGCTCTCTTTTTTTTCTCTTCATTTCCATGATGACACCATGCTGTGCTGTCTGCGGCCTGTGACTGTGAGTTAGGCGACCAGATTATCTGACTTGGAAGAGTAACTGAGGTGCATACTACATGGATGTCAGGATGATGAGAAAGTAGCTTGCACCAGCTCGGAGGACTTTGCAAGTTTCCACCACCTTGATTGGAGGTTCCACCGTTTTTTGTTTATTTTTTGGGTGCTGATGAAGGGGGGATTAACTACTGAAATGGATTAGCCTCCACCTTTCACGGCTGAAGTTGATAATTAATTACTGTAAAGACATTGAGTATTCTGTTTAAGTGTCCATTTCAAAGATGGGGCAAAATGTTTCCCTGTCGTTATTTTACAGTTAAAGATATGTATTATGCTTCTTTTCAGGCCAATTTGTCATCCTAGGAACATTTTTCTCTACAGGTGACTTATTTCCTAATGAACAATTTATTTTTCGAGA 3543 38.7 MISSFAWHGRWRDSMWLFVYALRDNLGPIEITLSSVLSSISVFTPVELGSQIHNLVLKLGFESDAIVTSSLVDMYAKVGSIDSAMKVFVDMPVRDLISWNTMIMGLVNNGKYFDALHTFNKLVKEGVLADRITLAGVLLACSYAGFVEEGLVIFSTMTYEHGIVPRNEHYSCVVNLLSWAGKFEEAVNIIKTTPCQPTSTFWTSLLGVCAIHGDLKVIERVAERVMKLEPQSSLPYSVLAQAYAMRGRWESTVRVRKTWENIAAQKVKGCSWIVTKDYAYAFEDDQLQHLWREISVLELIIWEVEYGIVYDQRI 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45259840 45263519 - XM_039028823.1 Bhi04g01837 33446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01837 314 Pfam E motif 212 273 IPR046848 -
Bhi04g01837 314 PANTHER OS03G0435200 PROTEIN 1 308 - -
Bhi04g01837 314 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Bhi04g01837 314 Pfam PPR repeat 97 127 IPR002885 -
Bhi04g01837 314 Pfam PPR repeat 69 94 IPR002885 -
Bhi04g01837 314 Pfam PPR repeat 169 191 IPR002885 -
Bhi04g01837 314 Gene3D Tetratricopeptide repeat domain 143 269 IPR011990 GO:0005515
Bhi04g01837 314 TIGRFAM PPR: pentatricopeptide repeat domain 97 130 IPR002885 -
Bhi04g01837 314 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Bhi04g01837 314 PANTHER OS07G0578800 PROTEIN-RELATED 1 308 IPR045215 GO:0003723|GO:0009451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01837 - - - csv:101210612 547.354
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01837 Bhi-Chr4:45259840 Bhi01g03675 Bhi-Chr1:93874902 1.57E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1173 . . . . . . . . Cmo04g02524 . . . . . . . . Bhi04g01837 . . . Hepe02g2102 . Lcy10g1297 . . . . . . . . . . Cone20ag0413 . . . . . . . . . . Bma01g00880 . . . . . . Car04g02324 . . . . . . . . . . . . . . . . . Lsi08g00508 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011857 1 2 0 0 1 1 1 1 1 1 1 1 1 0 1 1 2 0 1 1 1 1 1 1 1 1 2 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01837 Bhi_Chr04 FPKM 0.0 0.0 0.0 0.0 1.411374 0.0 0.0 0.977021 0.0 1.4051