Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01843 AACCCATACACCCCCAGAGAAAAGAAATGGTAAAAGACTCTGTGGGGGGCGATAATATCTATAATGCTTTCATAATTCTGGTTTTAGTTTACTGAACCCTTCTCTTTAGTTTCTTTGTCGCCATTTGGCCGATGGGATTAAGGAATTTATGAGATTTCATCTGTCACGGGGACTTCGATGTGAGTTTTAACGCGGGTTTTCTTTCATTCTTTTCTTTATTTGTGGGTCTCTGTGAAAAATTCCAAGTCGGCCCTGGAAAAAGAGAAGGGTCTGAAACTAATCGAACAAGCAACCCCTTGAAGAAGAAAAGCGAAAAGAAACAACACGCACTTCTACTTACTTTTGGCTGTTCATTCTCCTCTGGTTTCTAGACAGGAGATTCAAGAGCAGAAGAGCTTATTTGGATGCAAAAGAATCAGAGGGATATGTCTACCAATGCTATTGCTTGCGCTGAGAGAGCTACAAATGACGTGCTTAGCGCTCCTGATTGGGCCATAAATATTGAGCTCTGTGATATTATTAACATGGATCCTAGGCAGGCGAAGGATGCATTGAAGATACTCAAGAAGCGTCTTGCTAACAAAAATCCTAAAATACAACTTCTAGCGCTCTATGCATTGGAGGCTCTAAGCAAAAATTGTGGTGATACTGTTTTTAAGCTGATCGTAGATCGTAATATCTTGCACGAAATGGTTAAAATTGTAAAGAAGAAGCCTGATTCAACTGTACGGGACAAAATATTAACTTTGGTAGATGCATGGCAAGCAGCAATTGGTGGTGGCTCTAAGGGAAAGTTTCCACAGTACTATGCAGCCTACAATGAATTGAAGAATGCTGGATTTCAATTTCCACCAAGAGAAGAGAACGTTGAGCAGTTCTTTAGTCCACCTCAGATACAGCCAGTCATTGAGCACCCTGTTTCAGCTTATGATGATCTTGCTGTTCAGGCTTCTCTCCAGTCTGATTCTTCTGGTTTAGGCTTGCCAGAAATTCAAAATGCACAGGAACTAGCACATGTTTTATTGGAAATGCTTGGTGCGTTGGACCCTAAGACTCCGGAGGCTTTGAAGCAAGAAGTGATTGTTGATCTGGTTGATCAGTGCCGTTCCTACCACAGCCGTGTTGTGATACTTGTGAATGAGACAACAGATGAGGAACTGTTACGTCAAGGATTGGTATTGAATGACAGTCTGCAGCGTGTACTCAGCTGCCATGATGACATTGCGAAAGGAACATTTACAATGGAAGCTAGAACAGCAGAACCTCCTGTTCCATCGGTTCCATATATCAACCCTGAGGATGATGACTCGGAAGATGACTTTACACCGTTATCTCGCAGGCCAACGAGAGATAACATTTATGAAAGGGACAGGAAATTGGCAAATGGTCCATCATCGCGAGTAAGTCCACTTCCTTCACCTTCATCAAAGAAGACGGCTAGTGTGGAAATGATCGATCACCTTAGCGGGGACATGTACAAACCTGAAGGGTCTCCCAGGATAGTAGAGCCACCATCAACTTCTTCTTTTTCACCTTTCTACACTAGACAGCCTTTGTTCGACGAACCACCTCCAAGAAGCATATCCACCAATCCACTCCTCACAACACCTCGGGACACCCAATCTCCGAGCGCCCTTCCTCCCCCTCCCTCAAGATATAATCAAAGACAACAATATTTTGAGCAACAAAAAGCTGTTACAGGAGGCAGTCAACCCCATTTGAGCAACGATTATAGTTCTTATGACAACATAGTGGGGAATACCAAGAATCTGTCACTCAGTCCTACCCCAACCAGATCCGTGGAGCATGAAGAAACCCTTTTCAAAGATCTGGTGGATTTTGCCAAGGCCAAGTCATCTTCATCCTCCAAATTGAACCGACCGTTCTGAGACACGACTAGTAAAGACTGACCTTGTTTTTTTCTTCGTCGTCGTCGTAGTGTAGGCAGGTGATTGTGGGGTTCGTTGATGAGGTTGTATATTCATGATCATGAACAAAGCCATTCATTTAGTAAGGAAGTAGGTGTTAGAATTTTTTCATGTTGCTTTGGATGGATCATAGAGTGAGCCACTGATCTGCATATATATTATATATTATATTCATTTGGTAATACTCTAGTAAAAAACCTTGATCTAATTGTTGTATGATTA 2150 42.37 MQKNQRDMSTNAIACAERATNDVLSAPDWAINIELCDIINMDPRQAKDALKILKKRLANKNPKIQLLALYALEALSKNCGDTVFKLIVDRNILHEMVKIVKKKPDSTVRDKILTLVDAWQAAIGGGSKGKFPQYYAAYNELKNAGFQFPPREENVEQFFSPPQIQPVIEHPVSAYDDLAVQASLQSDSSGLGLPEIQNAQELAHVLLEMLGALDPKTPEALKQEVIVDLVDQCRSYHSRVVILVNETTDEELLRQGLVLNDSLQRVLSCHDDIAKGTFTMEARTAEPPVPSVPYINPEDDDSEDDFTPLSRRPTRDNIYERDRKLANGPSSRVSPLPSPSSKKTASVEMIDHLSGDMYKPEGSPRIVEPPSTSSFSPFYTRQPLFDEPPPRSISTNPLLTTPRDTQSPSALPPPPSRYNQRQQYFEQQKAVTGGSQPHLSNDYSSYDNIVGNTKNLSLSPTPTRSVEHEETLFKDLVDFAKAKSSSSSKLNRPF 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 45440757 45444956 + XM_039030417.1 Bhi04g01843 33452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01843 494 PANTHER TOM1-LIKE PROTEIN 8 493 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bhi04g01843 494 ProSiteProfiles VHS domain profile. 19 149 IPR002014 GO:0035091|GO:0043130
Bhi04g01843 494 ProSiteProfiles GAT domain profile. 187 275 IPR004152 GO:0035091|GO:0043130
Bhi04g01843 494 CDD VHS 17 143 - -
Bhi04g01843 494 SUPERFAMILY GAT-like domain 159 276 - -
Bhi04g01843 494 MobiDBLite consensus disorder prediction 279 446 - -
Bhi04g01843 494 MobiDBLite consensus disorder prediction 416 446 - -
Bhi04g01843 494 PANTHER TOM1-LIKE PROTEIN 4 8 493 - -
Bhi04g01843 494 MobiDBLite consensus disorder prediction 305 327 - -
Bhi04g01843 494 Pfam VHS domain 17 145 IPR002014 GO:0035091|GO:0043130
Bhi04g01843 494 Pfam GAT domain 203 276 IPR004152 GO:0035091|GO:0043130
Bhi04g01843 494 Gene3D - 4 166 IPR008942 -
Bhi04g01843 494 MobiDBLite consensus disorder prediction 331 347 - -
Bhi04g01843 494 PIRSF TOM1 1 492 IPR014645 -
Bhi04g01843 494 SMART VHS_2 12 145 IPR002014 GO:0035091|GO:0043130
Bhi04g01843 494 SUPERFAMILY ENTH/VHS domain 15 150 IPR008942 -
Bhi04g01843 494 Gene3D - 190 282 IPR038425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01843 - - - csv:101219096 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01841 Bhi-Chr4:45440755 Bhi04g01843 Bhi-Chr4:45440757 0 dispersed
Bhi04g01843 Bhi-Chr4:45440757 Bhi09g01854 Bhi-Chr9:50970307 2.43E-180 dispersed
Bhi04g01842 Bhi-Chr4:45440756 Bhi04g01843 Bhi-Chr4:45440757 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01843 Bhi_Chr04 FPKM 1.467112 1.584504 2.458688 2.593916 3.411478 4.40459 3.610629 39.924446 42.912903 44.344318