Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01857 TGGGAAAGAGTTCTGCGTGTTCGCACTGAGGGTTGGAGACGACGATGAAGCTCACGTGGAAGAACAAGGGCAATACTAAGAAGCGATCTCTTACAGCAATTTCACGCCGTTCAAATCTTCCTTTTGAGGTACCTGACGAGGTGGAGGAAGACGATAGGGCTAATCCCCAAGATAAAGAAGTAAACGTTGAGGCGATAGACCGGAGAGAGGATGAAGCTTCAGACCGTTCGTTTTCAGACCTCAAACGTCTCGCTGAATCATTTCAGGCTCAAGGCGATACGCTTGCCGAGGATGGGAAATTTCGGGAAGCTCTAGGAAAATGGGAGACTGCTCTTACTTTGATGCCTGAAAATGCAGTTTTACATGAACAAAAGGCACAAGTTCTACTGGAGGTTGGGGAAGCTTGGGGTGCTTTGAAGGCAGCAACCAGAGCTACTGACTTAGATCCATCATGGGCTGAGGCGTGGATCACTCTTGGTAGAGCACAGTTAAACTTTGGGGAACCTGATAGTGCTATAGAAAGCTTTGACAGAGCACTGGCCATTAAGCCTGATTCTGGAGATGCCCGAGATGATCGACAAACTGCAATGCATCTTATAAAGCGTCGAAAACAGCTCCATTCAGCTGGGTTGAGCAGTTCTAAAAATCGTTATTTGGTGGGAGATAAGTTGAACAATGCTGATGGTTCATGAAGTGTAATCTAAAAAATAATAGGATGTAGTTTGTAATTTAGGATCTTAATGCATGGTTGAGCTTCCCCATGACCAAAAGAAGCATGTACCTGGGTTTGTTTAGTTTGCATATAACTAAGTCCTCTTTGTGTGTGTGTATATATATATATTTACTAAATATGAGGAAAAAAGAAAATACAGGTACAAAGCTAAA 885 43.39 MKLTWKNKGNTKKRSLTAISRRSNLPFEVPDEVEEDDRANPQDKEVNVEAIDRREDEASDRSFSDLKRLAESFQAQGDTLAEDGKFREALGKWETALTLMPENAVLHEQKAQVLLEVGEAWGALKAATRATDLDPSWAEAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDARDDRQTAMHLIKRRKQLHSAGLSSSKNRYLVGDKLNNADGS 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 46827844 46831628 + XM_039028261.1 Bhi04g01857 33466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01857 215 Gene3D Tetratricopeptide repeat domain 63 203 IPR011990 GO:0005515
Bhi04g01857 215 MobiDBLite consensus disorder prediction 1 62 - -
Bhi04g01857 215 Pfam Tetratricopeptide repeat 110 171 - -
Bhi04g01857 215 SUPERFAMILY TPR-like 69 189 IPR011990 GO:0005515
Bhi04g01857 215 PANTHER OSMOSIS RESPONSIVE FACTOR 1 210 - -
Bhi04g01857 215 MobiDBLite consensus disorder prediction 37 62 - -
Bhi04g01857 215 ProSiteProfiles TPR repeat profile. 138 171 IPR019734 GO:0005515
Bhi04g01857 215 SMART tpr_5 70 103 IPR019734 GO:0005515
Bhi04g01857 215 SMART tpr_5 104 137 IPR019734 GO:0005515
Bhi04g01857 215 SMART tpr_5 138 171 IPR019734 GO:0005515
Bhi04g01857 215 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Bhi04g01857 215 ProSiteProfiles TPR repeat region circular profile. 138 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01857 - - - csv:101203269 375.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01857 Bhi-Chr4:46827844 Bhi09g02680 Bhi-Chr9:71902186 3.63E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g201 . Blo12g01116 . . . . . . . Cmo15g00656 . . . . Sed03g0441 . . Bhi04g01857 Tan11g1227 Cmetu03g1243 . Hepe02g2733 . Lcy10g1268 Cla08g00630 Cam08g1048 Cec08g0634 Cco08g0746 Clacu08g0755 . Cre08g0564 . . Cone17ag0811 . . . . Cme03g00478 . . . . . . . . . . . . . . Car15g00592 . . . . . . . . . . . . . . . . Lsi08g00475 . Chy03g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011996 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01857 Bhi_Chr04 FPKM 10.834068 12.237858 9.556168 9.938482 11.278866 9.858334 11.662704 14.257683 15.083287 14.721881