Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01871 AAATAAGAAAAAGATTTATTGATGTTCTAACTTCTAGTTTATGAGGTAATTACTTGGAAAAAAAAAAGAAGAAGAAGAAAAGAGAAGGAAAAGACGGTTGCCCTAGCCTCCATCTTTATCCCCTCCTTCAATCTTCCTCGCCGGCGACCTCCACAAGCTGCAGTTGACGAGCCTCGGACGGTGACGACCCACACGAACTCACTTTGATACAAGCAGGCATCCACGCATCCTTTTCGGCTTTCTAAGCGTTGATGTTTGTTCAACGAAGTGGATTTTCGAGTTGATAATTATAGTATTATCGATTGAGGTAAGTAGTTTCCACATTCCTTCCACGATGTAAATGTAAATTCGAACCACCGGTTTCGAATGCAAATGTGCCGTCAGATACCATTTTGTTCGCTCACGCCACCATCGTTTCGTTCTTCTAGAGGAGCGAGAAAGAAAATAACAACGGTGCAACACTAGCCATTTTATGTTTTAGTTACTTAATTCTACACTCACTCGTTTGATGGATTTATAAAATTATTCAATCCAGCAATAGTTCGGTTTGGGAATACGCATAGTCTGTTTTGCAACTATCCGATTAAGAGGCTCTGCAGCTTCTTAAATGGTGGTTTCTTCTATAATTGCATCCGTAGTTGTTTTCATGTGATTGACATTGATCGAGGTGAAGTTTGATTCTGGGTACCATGATGAGAATTTGTAGCCATGGGAGAAGTAAACTTACACTATGTAGATTGCTAGCTAGGTTGTACAGTTCTGGTGAACAAACTGATACGGTGTCGGATTCAATCAAAAGTATCTGTAAAACCATGATGACGTGCCAAACGCTGGCACTTGAGACTGCCCTTGACCTAAATGGGATTAGGATTTCACCAGAGATAGTTGAGGCTGTTCTAAAAAGATTTGAGAATGCTGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAGCAGCGAAACTATGTCCATAGTGTGAGGGCTTACCACTCTATGATTGAATCTTTAGCTAAGATTAGGCAGTACCAGATGGTGTGGGATCTCGTGAATGTCATGAGGAATAAGGAGATTCTAAATGTTGAGACCTTTTGTATTATCATGAGAAAGTATGCTAGAGCTCAGAAAGTAGAGGAAGCAGTTTATACATTTAATGTCATGGAAAAATATAATATGAAACCAAATGTAGCTGCATTTAATGGATTGCTTAGTGCTCTGTGCAAATCCAAGAATGTGAGGAAGGCTCAGGAAATTTTTGACAATATGAAGGACCAATTTGTTCCTGACTCAAAAACTTACAGCATACTCATTGAAGGATGGGGTAGGGCTCCAAATCTTCCAAAAGCAAGGGAGATTTATAGAGAAATGCTGGATAGTGGCTGCCTTCCCGACATAGTAACATATAGCATTATGGTTGACATTCTTTGCAAGGCTGGAAGAGTCGACGAAGCAGTTGGGATTGTAAAAGAAATGGATTCTAATAATTATAAACCATCATCATTTGTCTATAGTGTTTTGGTACATACGTATGGCATTGAAAATCGAATTGAGGATGCAGTCTCTACATTCTTGGAGATGGAAAGAAATGGAGTTATGGCTGATGTGGCAGCATATAATGCTTTAATCACTGCTTTCTGTAAAGCAAACAAGATTAAGAATGTCTATAGGGTGTTGAAGGATATGGACTTAAAGGGTGTTAACCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCAGTGGTGAGACAGATGAGGCATTTAGGATCTTTCGTAGAATGGTCAAAGTGTGCGAACCAGATGTAGATTCCTATACCATGATCATAAAAATGTTTTGTGGGAGGAAGGAGCTTGATATGGCTCTTAAAGTTTGGAAGTATATGAAGAAGAAGCAGTTTGTTCCAAGCATGCACACATTTTCTGTTCTTATTAATGGACTGTGTCAGATAGGCAATGCTACACAAGCTTGTGTGTTGATAGAAGAGATGATAGAGAAGGGAATTCGACCTTCTGGTGTCACATTCGGAAGGTTGAGACATTTATTAATTAAGGAAGGGAGAGAAGATGTTCTAAAATTTCTACAGGAGAAAATGAATTTACTAGTCAAGGAGCCATTATGTGATTGAGAAATCTCGGCTAAATGATGCCCTGCTGTTCAAAACTCCTATCTTTGCTGGAGGGACTATTCAGAGATATGGAGATGAAGTTTTGGAGGCTAATTGTTATCCAGATTCTGTCTCTTCCTTTCTTCTGTTGCAGTGCTGAAATGCAAAAGCAGAGAAAGAAAGAGGGTCAGATAATTTGAGTTGCCACTTGCTACTACCGATTTCGATGGTTAAAGTGTTAGACAAAGTCTCAAGCCATTTCTCCTAACAAGTGATTTTCCAGACAAAGCATCAAGCGAATTCTCAACAACCACCAATGACCAGACAGGTCCCATTGTTTCCATCAACGCCAACAGGATATGTTAATTGCAGATCTAAACGATTTTGCAACAAGTATACATACAAGCTGAAACTGGTGATTTTGTTTTGTAATATTTATTTACAACCATTTCCATTGGAGTGAAGGAAAATGTTTCTCACTCTCTTTCCTCATTTTGTTCTTGAAATGGGTGTTGGGTCTGTTTCATGAAGAAGTCAGTTAAATGAAATAATTTTCAGTACTACTTTATTTCTATTTATAAACTCTTGTTGCAAA 2706 38.73 MMRICSHGRSKLTLCRLLARLYSSGEQTDTVSDSIKSICKTMMTCQTLALETALDLNGIRISPEIVEAVLKRFENAGMLAYRFFEWASKQRNYVHSVRAYHSMIESLAKIRQYQMVWDLVNVMRNKEILNVETFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVPDSKTYSILIEGWGRAPNLPKAREIYREMLDSGCLPDIVTYSIMVDILCKAGRVDEAVGIVKEMDSNNYKPSSFVYSVLVHTYGIENRIEDAVSTFLEMERNGVMADVAAYNALITAFCKANKIKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGSGETDEAFRIFRRMVKVCEPDVDSYTMIIKMFCGRKELDMALKVWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLIEEMIEKGIRPSGVTFGRLRHLLIKEGREDVLKFLQEKMNLLVKEPLCD 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47092213 47096022 - XM_039029290.1 Bhi04g01871 33480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Bhi04g01871 480 Pfam PPR repeat family 372 421 IPR002885 -
Bhi04g01871 480 Pfam PPR repeat family 304 350 IPR002885 -
Bhi04g01871 480 Pfam PPR repeat family 164 209 IPR002885 -
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Bhi04g01871 480 Pfam PPR repeat 272 301 IPR002885 -
Bhi04g01871 480 Pfam PPR repeat 133 161 IPR002885 -
Bhi04g01871 480 Pfam PPR repeat 99 127 IPR002885 -
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 342 368 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Bhi04g01871 480 TIGRFAM PPR: pentatricopeptide repeat domain 307 339 IPR002885 -
Bhi04g01871 480 PANTHER OS03G0761300 PROTEIN 11 477 - -
Bhi04g01871 480 Pfam PPR repeat 230 261 IPR002885 -
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Bhi04g01871 480 SUPERFAMILY TPR-like 95 436 IPR011990 GO:0005515
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Bhi04g01871 480 Gene3D Tetratricopeptide repeat domain 368 435 IPR011990 GO:0005515
Bhi04g01871 480 Gene3D Tetratricopeptide repeat domain 264 367 IPR011990 GO:0005515
Bhi04g01871 480 Gene3D Tetratricopeptide repeat domain 194 263 IPR011990 GO:0005515
Bhi04g01871 480 Gene3D Tetratricopeptide repeat domain 33 193 IPR011990 GO:0005515
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Bhi04g01871 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Bhi04g01871 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01871 - - - mcha:111011765 890.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01871 Bhi-Chr4:47092213 Bhi12g00890 Bhi-Chr12:26762285 1.94E-129 dispersed
Bhi04g01870 Bhi-Chr4:47092213 Bhi04g01871 Bhi-Chr4:47092213 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01871 Bhi_Chr04 FPKM 1.223648 1.682105 2.087046 1.776555 1.841038 1.616856 1.639583 1.6911 1.955383 2.116894