Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01876 AGATGAAAGTATTATGAAGTTTGAAAAATGAAGAACATACTCTCAATTAAATGTGTTGATGAACAGAATCACTGTATCAACTGAATTTTTCTCTGCTCCTCACATTCCTAGAAACTTACAAGCGAAGTCACATCCTCTTTCTCTTTGGTTTTCTCCGATTTCAATCCAAATCCATTGGAGCTTCATTCTCCAGCTCCTCTGCAGATTTCTCTTCTTTTCTTCTCTTCTCTTTTCGCCCCGATCCTTCAAGATCTTCTGCGATTTCAGAAATGAGCTTTTTGAGGCCCTTTCTGTTGTATTCTTCGCTACGATGGATGAATTGTCAGAGTTGGGGTTTTCCCAGATTGCCTGGATTTGACGGTTTGCTCAGATTTCTTGTGGTTTTGATCTTGTGGTCTATGCTTTTGGAGATTCATTCCATTCCATCGTCTTCAATGTATCCAACTCTTCGTGTCGGCGATCGAATTCTTGTCGAGAAGGCCTCTTATTACATCAGAAATCCTTCTATAGATGACATTATAACCTTCCGAGACCCGACACAGCAATCTGGACGCAGAGAAGAGAACATCGTTGTAAAGAGAGTTGTTGCAAAAGCCGGTGACACGGTTGAGGTTTGTCAGGGATGCCTTTATGTCAATGGGATTGCTCAGGATGAAAGCTTCTTAGCGGAGCGGCCAACGTACACCACAAAGTCGACTCAAATTCCTGAAGGCCATGTTTACGTGTTGGGCGACAACCGCAACAACAGCTATGACTCCCATATTTGGGGACCTCTGCCCATCAAAAACATCCTTGGGAGATACCTCTGTTCTTGCCACAAACCAACAAGTTGAAATGAGCTTAGGTAACATTATTCTGCCTGTATGTGACAATTTGTTTTAGTTCCACATCCTCATCTAGGACTAGGATTGTTATTCATTATTATATATGGTTCATAAACTTGTGTATTAGCTATGGTGGAGGTCGAGTTATTTTATTAGTTATCTTTAACAACCATGCCATTTGTTTGTT 1011 41.05 MSFLRPFLLYSSLRWMNCQSWGFPRLPGFDGLLRFLVVLILWSMLLEIHSIPSSSMYPTLRVGDRILVEKASYYIRNPSIDDIITFRDPTQQSGRREENIVVKRVVAKAGDTVEVCQGCLYVNGIAQDESFLAERPTYTTKSTQIPEGHVYVLGDNRNNSYDSHIWGPLPIKNILGRYLCSCHKPTS 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47233582 47236389 - XM_039029540.1 Bhi04g01876 33485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01876 187 ProSitePatterns Signal peptidases I signature 3. 150 163 IPR019758 GO:0004252|GO:0016021
Bhi04g01876 187 PANTHER SIGNAL PEPTIDASE I 5 187 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bhi04g01876 187 Pfam Signal peptidase, peptidase S26 35 177 IPR019533 GO:0004252|GO:0006465
Bhi04g01876 187 CDD S26_SPase_I 51 177 IPR019533 GO:0004252|GO:0006465
Bhi04g01876 187 SUPERFAMILY LexA/Signal peptidase 44 179 IPR036286 -
Bhi04g01876 187 TIGRFAM sigpep_I_bact: signal peptidase I 34 179 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bhi04g01876 187 PANTHER CHLOROPLAST PROCESSING PEPTIDASE-LIKE 5 187 - -
Bhi04g01876 187 PRINTS Bacterial leader peptidase 1 (S26A) family signature 44 60 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bhi04g01876 187 PRINTS Bacterial leader peptidase 1 (S26A) family signature 101 113 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bhi04g01876 187 PRINTS Bacterial leader peptidase 1 (S26A) family signature 145 164 IPR000223 GO:0006508|GO:0008236|GO:0016020
Bhi04g01876 187 ProSitePatterns Signal peptidases I serine active site. 53 60 IPR019756 GO:0004252|GO:0016021
Bhi04g01876 187 Gene3D Umud Fragment, subunit A 53 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01876 K03100 lepB; signal peptidase I [EC:3.4.21.89] - csv:101221795 348.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00299 Bhi-Chr4:7057507 Bhi04g01876 Bhi-Chr4:47233582 2.62E-46 dispersed
Bhi04g01876 Bhi-Chr4:47233582 Bhi05g00394 Bhi-Chr5:7761972 1.88E-08 dispersed
Bhi04g01876 Bhi-Chr4:47233582 Bhi09g03385 Bhi-Chr9:86164896 1.40E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g227 . . . . . . . . Cmo04g02501 Cmo15g00666 . . . . Sed01g3097 . . Bhi04g01876 Tan11g1248 Cmetu03g2013 . Hepe02g2219 . Lcy10g1247 Cla08g00618 Cam08g1032 Cec08g0621 Cco08g0733 Clacu08g0742 . Cre08g0550 . . . Cone20ag0430 . . . . . . . Bda01g01456 Bpe02g01653 . Bma01g00801 . . . . . . Car04g02307 Car15g00606 Cpe01g02069 . . . . . . . . . . . . . . . Lsi08g00458 . Chy03g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011233 1 1 0 1 1 1 2 1 1 1 1 1 0 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01876 Bhi_Chr04 FPKM 8.951697 10.497648 10.708817 10.09667 10.084324 10.442904 10.836261 13.493925 12.564944 14.138047