Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01878 TTCACTTTCGATAACGCTCTCTTCTTCTTCTTCTTCTTCTTCAATCTTCAAAATCAAAATTCTCATGAAATCGTAATTCCCTTTCAAACTCCAAGAACTTTAACTATCTTTTCTTTCCCCCCTTTTTTCCCTTTTGTTGTTTTGATTTTTGATTCTTTGCTTTCTTGGTGTTTCTCTCTCTCTTTCTCTCTAACGCCAAGAACGCTGAAATTCAAATTAGAGAGAAATTTGAAGTCTTCTTTGAATTTTACTCTCGAATTCTCAACTGGGTTTGATTCGATCCGCCATGTCTACCCATAATCGCCGTCCTTCGTTTTCGTCGTCGACGACGTCGTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCGGACAATGTAGGAAAGGTTATGGCGGTTCCACCACACTTGGCGAAGAAGCGAGCGCCACTTGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGTGCAGCCAAAAGCTCTGTTCCGCCTGCTATTATGGTGCCTTGTGCAACCAAAGCTGTCAAGGCCAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGCCGGTGACCAATTCGACCACATTGGTTGATGTCAAAACGACGAATGCAGTTGCTCCTAGCAATGCTACAGCTTTCTCAAGAACTGATGCCACGGCTGTCTCTAGTTGTATGGATGTCTCTCCCTCTAAATCAGATGGAGTATCAGTTTCCTTAGATGAAACTATGTCTACCTGTGATTCTTTTAAGAGTCCCGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGCCCGGCACCAATTAGTAGTCAAGCACCAATTAAAGGTAGTATATGCAATAGAGATGTACTCACAGAAATGGCAACAGATGGCGATATCATTGATGTAGATATCGATTTCATGGATCCCCAGCAATGTGCTACAATTGCTTGTGATATTTACAAGCACTTGCGAGCATCTGAGGCAAAGAAAAGGCCTTCTACAGATTTCATGGAGAAAATTCAGAAGGAAATAAATTCAAATATGCGTGGCATACTGATTGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTCGTGCCAGATACTCTATATTTGACAGTGAACTACATTGATCGATACCTATCAGGAAATTCGATGGATCGACAACGATTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCGTAAGAATCCCAAACCATTAATGTTGTTTCCCTATAAATTTCCTTTGATTTTGATGGTCTGATATTAACTAGTAAGATTGTATACTTCTAGAAAAATGTAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTATATAACTGAATAACACATATTTTAAAAAGAGGTATTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTTGAAATGACAGCTCCAACACCAAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCACCACCGACGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCCGAAATACTCTTTTAGAATACAGTATGCTTTGCTACGCACCATCACTTGTGGCTGCCTCGGCGATCTTCTTGGCAAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAGCATTATACACATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGTAACACCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGTACAAACACGTGGCGAAGAAGTACTGCCCTCCGACGATACCTCCGGAGTTCTTCCAGAATCAAACACAGTAAATTTGTATTCCAATGCTCTGTTGGATTAGATGTAGCAGCAGCCTGACTTAACAGCAGTTAGAAAATAGAGAGAGACATAAAATGCCCCTCCCCTCCCCTCATTTTTGTTGATCCCCCCCCGCTTTGTAAGCTTTTTCTCATCATAGCTTTTGATGTAAGCCAATGCCACTAGTTTTTCTCCACAACATCAGGATCTCGGCGGTTTGTTGTAGCGTTGTAACGAATTATCGAATACCAAAATGCTGAGATTTGTACAAAGTTCATATGCTTCTATTGTCATATTTCTTCAAAACTTTGATATATAGAAGCAATAATGTACTATACTAAAATGAAGGGAGGCAACTCAGATATATCTTAACATTTCTTTATTA 2253 41.28 MSTHNRRPSFSSSTTSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMVPCATKAVKARKSSPARTRSTNLPVTNSTTLVDVKTTNAVAPSNATAFSRTDATAVSSCMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPIKGSICNRDVLTEMATDGDIIDVDIDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKEINSNMRGILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIAS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47295005 47298692 - XM_039028685.1 Bhi04g01878 33487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01878 320 Pfam Cyclin, N-terminal domain 235 320 IPR006671 -
Bhi04g01878 320 PANTHER CYCLINS 33 320 IPR039361 -
Bhi04g01878 320 Gene3D - 235 248 - -
Bhi04g01878 320 CDD CYCLIN 265 320 IPR013763 -
Bhi04g01878 320 Gene3D - 249 320 - -
Bhi04g01878 320 MobiDBLite consensus disorder prediction 1 32 - -
Bhi04g01878 320 ProSitePatterns Cyclins signature. 266 297 IPR006671 -
Bhi04g01878 320 SUPERFAMILY Cyclin-like 225 320 IPR036915 -
Bhi04g01878 320 MobiDBLite consensus disorder prediction 1 33 - -
Bhi04g01878 320 PANTHER CYCLIN-A1-1 33 320 - -
Bhi04g01878 320 PIRSF Cyclin_A_B_D_E 2 320 IPR039361 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01878 K06627 CCNA; cyclin-A - bhj:120075363 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01878 Bhi-Chr4:47295005 Bhi10g01536 Bhi-Chr10:37659300 3.95E-64 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g229 . . . . . . . Bma01g02702 . . . . . . . . . Bhi04g01878 . . . Hepe02g2221 . Lcy10g1245 Cla08g01172 Cam08g1636 Cec08g1210 . Clacu08g1332 . . Cone4ag1423 Cone7ag1514 Cone17ag0869 . . . . Cme03g00509 . . . . . Bpe14g00392 . Bma02g00209 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01033 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003616 3 2 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01878 Bhi_Chr04 FPKM 1.003611 0.616428 1.277604 1.082028 1.655403 2.173523 2.109528 1.750068 1.560525 1.757073