Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01880 TTTTGCCTTGAGAGAAAAGAGAGAGAACTTTGTACCTTTTGTTGAAAAATAAAGTTCTTCATTTTCTCCTTCAAAAAGTTCTTCATTTCTCCCAAAAGTTCTTCATAAGTTCTTGAATTCAATCGACAGCATCGACACTGAAGAGAGAATAAAAGAAATGGGAAGTCAGCAGAAGGAAGCACAAATGAGTACGGTGGCCACACCGTCCTTCGGTGGTGGCAGCAACCGCATAGCAGCGGTTAACACGGGAGTGGCAACGGCAACTCCGACCAACACCGTCAAGCCACAGAATCATCGAGAAGAACAAACCATCAATCATCAGAAACCTGGATGGAGAAAGTTTCTATCACATGTTGGTCCTGGCTTCCTTGTCTCATTGGCTTACCTTGATCCTGGCAACTTGGAAACGGACTTGCAGGCTGGAGCTAATCACGGATTCGAGCTTCTATGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCCCTCGCTGCAAATCTTGGCGTAAGCACCGGAAAACACCTTTCGGAAGTTTGCAAAGCCGAATATCCCATATTTGTAAAGTACTGCCTTTGGTTGCTAGCTGAAGTTGCTGTAATAGCAGCCGATATTCCAGAAGTGATAGGAACAGCCTTTGCTCTGAATATTCTATTCCATATTCCTGTTTGGGCTGGGGTTCTTCTCACCGGTTTGAGTACCCTCTTGCTCCTTGGACTCCAAAGATATGGGGCGAGGAAGCTGGAATTGCTGATAGCAATATTAGTGTTCGTAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTTAAGCCTCCGGCGACCGGCGTTTTAAAAGGAATGTTTGTTCCAAAGCTCAACGGCCAAGGAGCCACCGCCGACGCCATCGCTCTTCTCGGCGCCCTCGTTATGCCGCATAACCTCTTTCTTCATTCCGCTCTTGTCCTCTCAAGGAAAGTCCCCAATTCCGTCCGTGGTATCAACGAGGCCTGTAGATACTTCCTAATAGAGAGCGGATTTGCACTGTTCATAGCATTTTTAATAAACGTGGCCGTCGTTTCAGTTTCCGGCACCGTTTGTACGGTCGGAAAAGTCTCCGAAACCACCGCCGATCAATGCTCCGACATAACTCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTACTGGGAAAATCGAGCTCCACTATTTACGCCATAGCGTTGTTTGCCTCTGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGTCAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGGCGAGAAACCTTATGACGAGGTCCATTGCAATTACGCCCAGTCTCATCGTATCCATCATCGGTGGACCTCAAGGTGCCGGCCGTCTCATCATCATTGCATCGATGATTCTTTCGTTCGAGCTTCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGCAGCACCAAGATGGGCCCCCACAAGAACTCCATATACATCATTGTAATCTCGTGGATATTGGGCCTGGCAATCATCGGCATCAACATCTATTATCTCAGTACGGCCTTCGTGGGCTGGCTAATTCACAACAATTTACACAGAATAGCAAATGTGTTCATTGGGATCGTTGTGTTTCCTTTGATGGCTGCTTACATTCTTGCCGTTATTTACCTAATGTTTCGAAAAGACAGGGTTGTGACTTACATTGAGCCCGAAAAGGATGACCCTATGGCCCAAGCCCATTTAGAAAGTGGGCTTAATAATTCTTTTGGGCCTCGTGACTTCACTCCGGTGCCTTTCAGAGAGGATTTGGCCCATATCCCACTACCAGAGTATAAGCCTTGATAGCTAATCTGGGCCTGCATTCAACTCTGGGCCGATCGTCTTTTTTCTGCCACCTTGGCGCACTAATGTTGCTTTTTGTAGTCTTTGCTACAGGCCATTCTGTAGATAGTTTGCTTCTGTCGTTTTTTTCCCTGAATTAATGACAAAAGTGGGTGGAGAAATGTTAATTGAACTATGTTCAAGTTGAAACGATGTGTGTTATGTAATTTCAAACATGTAATAATTAAAATGATGATAATAAATCATTATTTTTC 2097 45.59 MGSQQKEAQMSTVATPSFGGGSNRIAAVNTGVATATPTNTVKPQNHREEQTINHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPIFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFVMAACFFGEMSYVKPPATGVLKGMFVPKLNGQGATADAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINEACRYFLIESGFALFIAFLINVAVVSVSGTVCTVGKVSETTADQCSDITLNSASFLLQNVLGKSSSTIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSIYIIVISWILGLAIIGINIYYLSTAFVGWLIHNNLHRIANVFIGIVVFPLMAAYILAVIYLMFRKDRVVTYIEPEKDDPMAQAHLESGLNNSFGPRDFTPVPFREDLAHIPLPEYKP 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47372134 47384840 + XM_039030368.1 Bhi04g01880 33489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01880 561 PRINTS Natural resistance-associated macrophage protein signature 141 167 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PRINTS Natural resistance-associated macrophage protein signature 169 188 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PRINTS Natural resistance-associated macrophage protein signature 194 215 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PRINTS Natural resistance-associated macrophage protein signature 244 267 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PRINTS Natural resistance-associated macrophage protein signature 354 373 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PRINTS Natural resistance-associated macrophage protein signature 382 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PRINTS Natural resistance-associated macrophage protein signature 414 433 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PANTHER METAL TRANSPORTER NRAMP5 52 558 - -
Bhi04g01880 561 MobiDBLite consensus disorder prediction 35 54 - -
Bhi04g01880 561 Hamap Divalent metal cation transporter MntH [mntH]. 48 470 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 MobiDBLite consensus disorder prediction 1 22 - -
Bhi04g01880 561 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 60 436 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 Pfam Natural resistance-associated macrophage protein 83 444 IPR001046 GO:0016020|GO:0030001|GO:0046873
Bhi04g01880 561 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 52 558 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01588 Bhi-Chr3:33568153 Bhi04g01880 Bhi-Chr4:47372134 1.07E-37 dispersed
Bhi03g01589 Bhi-Chr3:33568153 Bhi04g01880 Bhi-Chr4:47372134 1.07E-37 dispersed
Bhi04g01880 Bhi-Chr4:47372134 Bhi11g01467 Bhi-Chr11:42557309 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01880 K21398 - csv:101219356 978.778