Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01892 AAAGAACCCACAGTCGGTCCAGCTCCAGTCTCCGATCGCGCAGCCACCACGACGCCGAGAGAAAATCCGTATTCTGAAGCAGCTCGGTCCAGTTCCAGTTCCGAAATTGTTCATCAATGTCGGAAGTAATTGCCGTGATGGATATTGACGACGATAATGGCAACAACGAAGCTGAAAAGCCAGTCAAGGGCAAAAACGTTGCCAGTCCTGCCGCCGCACCCGACGGCAAAGCCATACCCTGGGTTGAGAAGTTTCGGCCTAAGTCTCTCGCTGATGTTGCTGCTCACCGCGACATTGTTGACACCATCGACAAGCTTACCAGTGAGAATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACTGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCAAAACATGATACTGGAGCTGAACGCATCAGATGATAGAGGGATTGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAAAGCTTTTCATTTGGGGCAAAGGCGTCTGTAAAATTGGTACTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACGAAAAATACAAGGTTTGCTCTTATCTGTAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCTCTTGATAACTTTCATGTCACTGAACGACTCAAATATGTTATTGAGGCTGAGAGGTTGGACGTCACCGAGAGTGGCTTAGCAGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCCTTAAATATTCTACAGTCAACGCATATGGCTTCTCAACATATTACTGAAGAAGCTGTATACCTTTGCACAGGGAATCCAATGCCAAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAGCCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAGGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTTGTTTTTAAGTTAAAGATGCCATCGGATATCAGAGTTCGGTTGATTAATGATCTGGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGCTACAACTCGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCGCTTGTCGCTGCTGCACAGTAGTTTTGTGGCTAAAGCGAAGTTTTGTAACGTATTAGAGTGGTTTGTTCACCAACCATCTGTCACGCCCGTGTTCAAGGATTAGGTACGAACTGTAGAGAATGTGAACATATTCTTCATTTGACTTCCAGCTTTTGGTGCAAAAAGTAAATGCTGACATTGATGTTCTTTATTATGTGGGAAGGAAATGTAATATTTGAAACTTTGAAAGTCTGCAAGAAAAGGTTAGATAACATTTAAAGTA 1449 43.55 MSEVIAVMDIDDDNGNNEAEKPVKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYQNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLKYVIEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKLKMPSDIRVRLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 47588459 47594555 - XM_039030488.1 Bhi04g01892 33501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01892 363 SMART AAA_5 72 202 IPR003593 -
Bhi04g01892 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Bhi04g01892 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Bhi04g01892 363 Gene3D - 264 361 - -
Bhi04g01892 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 37 359 - -
Bhi04g01892 363 CDD AAA 60 198 - -
Bhi04g01892 363 Gene3D - 202 263 - -
Bhi04g01892 363 CDD HLD_clamp_RFC 203 261 - -
Bhi04g01892 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 37 359 - -
Bhi04g01892 363 Pfam Replication factor C C-terminal domain 264 350 IPR013748 -
Bhi04g01892 363 MobiDBLite consensus disorder prediction 9 34 - -
Bhi04g01892 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Bhi04g01892 363 Gene3D - 36 198 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01892 Bhi-Chr4:47588459 Bhi11g00361 Bhi-Chr11:8642357 1.42E-68 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01892 K10756 - csv:101217230 687.952