Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01914 ATCAAATCTCTCTCACCAAAATTTCTCACTTCTCTCCTTCTCTCCCTCTCTCTTTCACCTGCCTTCACACTTCAAACAACGCCATGACCGTCGTAGCAACGGCCGCCGCTCTCTCCTTGCCGATCTCTTACTCTAAATCTCCCAAGCTCAATTTTAAGAAGGTGTTGAATTTTCAGAGTGTGAAAGGAGGATTTAGAGTGTTTGCTGTGTTTGGAGAGGAAGGAGCTATAGAGAGGAAGAGTGGTTGGGAAACGCTATTTGATGTGGAAGATCCGAGGACTAAAGTTCCTCAATGTAAAGGGAAGTTCTTAGATGTTAATCAAGCTCTTGAAGTGGCTAGATATGACATTCAATATTGTGATTGGCGAGCTCGGCAAGACGTTCTTGCAATCATGCTTCTTCATGAAAAGGTTGTGGAAGTCCTAAATCCTCTGGCCCGTGACTATAAATCCATCGGAACAATGAAGAAGGAGCTTGCCGGATTACAGGACGAATTAGCAGAAGCTCATAGACAGGTTCATATATCTGAAGCACGGGTTGCCACTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTGCATGATAGGCTGTTACAAGATAGAAACACAGCGGAATTGGATAGCCCATCTACCTCGACTGATACTTCTACACATTCCCATGCTTCTGTAAATAGAAGATCGCCGAAGAAAAGTTTGAACGTATCAGGTCCCGTCGAACCGTATCATCCCCGCTTGAAGAACTTCTGGTATCCTGTTGCTTTCTCCAGTGATTTGAAAAATGACATAATGATCCCATTTGATTGTTTTGAAGAACCATGGGTTCTTTTCCGAGGAAAGGATGGCAATCCTGGATGCATAAGAAACACATGTGCTCATAGGGCGTGCCCTCTTCACCTCGGTTCTGTCAACGACGGTCGAGTCCAATGTCCTTACCATGGTTGGGAATACACAACAGATGGCAAGTGTGAGAAAATGCCATCAACGCGACTGCTAAATGTGAAAATAAAATCTCTGCCATGTTTTGAGAAAGAAGGAATGATCTGGGTTTGGCCAGGTAATGATCCTCCAGCAGCTAATCTTCCTTCTCTAAACCCTCCTCCTGGTTTTCAAATCCATGCTGAGCTTGTCATTGACATTCCAGTGGAGCATGGATTACTGCTAGATAACCTTTTGGATCTTGCTCATGCACCTTTTACTCATACTTCCACTTTTGCAAAAGGATGGAGCGTACCCAGCTTGGTGAAATTTTTAACCCCTGCATCTGGGCTCCAAGGATACTGGGACCCTTACCCAATCGACATGGAGTTTCGACCACCTTGTATGGTGTTATCAACTATAGGGATTTCCAAGCCAGGAAAACTAGAAGGCCAAAGTACCAGAGAATGCTCAACACATCTTCATCAACTTCATGTGTGCTTACCTTCAACAAGACAGAAGACAAGACTACTGTATAGAATGTCACTGGATTTTGCTCCTGTGTTGAAGCAGATTCCCTTCATGCACTATCTCTGGAGACATTTTGCAGAACAGGTACTGAATGAGGACTTAAGGCTTGTCATTGGTCAGCAAGAAAGAATGATTAATGGAGCAAATATTTGGAACATGCCAGTTTCTTATGATAAGTTAGGTGTAAGATATAGGCTATGGAGAAATGCTGTAGAGGAAGGAGCAAAACAACTACCCTTCAGCGAATCAACTTGAACAGTATTCAAACTTAATTAACTTGAAACACTTCTTAGGACCCATAAATACAAGCCCCCTTCTTTTTCAAAGCTTAAAATTGCTGGCTGAGACAAAACCAACCTACCTTTCCTTCCTCCTTCAGCTTCCACTTTTGAGAAGAACGCTCTCAATTGGACTTTGCAGAAGCTGTAGAAAATCATCTGAAAGCAGAAAGATGTTGGCTCTTCCCCCTACAAAATCCCCTTTGTAAATTAGAACTGCTATATAAATTTGATCGGTTTTGCCTTTATAAGTTCTTTCTGCTTTGCTTTTGGTACGCTTCTCCAGGGCCCACTACCTAAGATCATTGTTTTAGGCTTGTAAAAGTACATGAACACGAGTATTGTTCGTTCTATGTATCTTCAACGAAGAAATTGAACAGTGTTAATAAAGATTTTTCATTCTCAA 2132 42.17 MTVVATAAALSLPISYSKSPKLNFKKVLNFQSVKGGFRVFAVFGEEGAIERKSGWETLFDVEDPRTKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLAIMLLHEKVVEVLNPLARDYKSIGTMKKELAGLQDELAEAHRQVHISEARVATALDKLAYMEELVHDRLLQDRNTAELDSPSTSTDTSTHSHASVNRRSPKKSLNVSGPVEPYHPRLKNFWYPVAFSSDLKNDIMIPFDCFEEPWVLFRGKDGNPGCIRNTCAHRACPLHLGSVNDGRVQCPYHGWEYTTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLNPPPGFQIHAELVIDIPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECSTHLHQLHVCLPSTRQKTRLLYRMSLDFAPVLKQIPFMHYLWRHFAEQVLNEDLRLVIGQQERMINGANIWNMPVSYDKLGVRYRLWRNAVEEGAKQLPFSEST 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 48282161 48286183 - XM_039028653.1 Bhi04g01914 33523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01914 539 MobiDBLite consensus disorder prediction 176 204 - -
Bhi04g01914 539 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 76 536 - -
Bhi04g01914 539 MobiDBLite consensus disorder prediction 176 209 - -
Bhi04g01914 539 SUPERFAMILY Bet v1-like 318 526 - -
Bhi04g01914 539 CDD Rieske_RO_Alpha_Cao 205 333 - -
Bhi04g01914 539 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 263 285 IPR015881 GO:0005506|GO:0051537
Bhi04g01914 539 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 76 536 - -
Bhi04g01914 539 Pfam Pheophorbide a oxygenase 409 501 IPR013626 GO:0010277
Bhi04g01914 539 Gene3D - 216 338 IPR036922 GO:0051537
Bhi04g01914 539 Pfam Rieske [2Fe-2S] domain 222 303 IPR017941 GO:0051537
Bhi04g01914 539 SUPERFAMILY ISP domain 216 325 IPR036922 GO:0051537
Bhi04g01914 539 Coils Coil 124 151 - -
Bhi04g01914 539 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 222 322 IPR017941 GO:0051537
Bhi04g01914 539 Gene3D - 340 533 - -
Bhi04g01914 539 Pfam Vanillate O-demethylase oxygenase C-terminal domain 355 379 IPR044043 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01914 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - csv:101205768 1053.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01914 Bhi-Chr4:48282161 Bhi09g03043 Bhi-Chr9:78675611 9.29E-25 dispersed
Bhi04g01913 Bhi-Chr4:48282161 Bhi04g01914 Bhi-Chr4:48282161 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g01914 Bhi_Chr04 FPKM 0.199074 0.347388 5.457089 6.744023 0.210044 0.261868 0.201986 1.481905 1.115789 1.916956