Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g01992 TAAACTCTTTCGTCGACCAACGGCTTACAATGGGGATTACAAGGATAAAAAAATACAAAACCCTAATTTCGACTTTGAAGTCAGCGACTCCGCATTTCTCTTTGCTTCTCCCCGCCGACACGACGAAACAGATCCCGGCGGCGAACTCTGACTCGCGACGGACACCCGGCAGACAAGTAGATCCGGCGGCAGCGGACTTGATAGATACTCGAACGACCAGCAGCGAACGAGGAGACCCACAGCGGTACGACCTCTTGATCTGCGTTGATCAGCCTTTATCAGGCCGCGACTCCGAGCCACAACCCTTCAAATTGTGCAAAATTCTTCGACACCCATTTTGATCATTGGAGAGCTTGAAAGAATGACAGATACAGGTGAAAATCAGCCGCCTGAACAAGTTTGTAGCTTCTTCAGAAAACCCACAAAGAACAAAAACATCAGAAAGCGAACGGTTGATGAAGACGAAGAAGGCTCTAAAACTGAGACTTCGTTGCTGCTAAATCAGAAGAAAGCCCCCAAAACTGAAAGCAAGCTTTATTTTTCTTCTGGACCCTCTAAAAATTCCTTGTCTAATGAGTCAGCGGAACCTAATAAACCAATTTTCCAATTTGAGTCTTCAAAGGAAATTCAAGTTCACCATGATAGCAGAGCAACTGCAACTCTAGAAACAGAGACTGATTTCTCAAGAGATGCACGAGCCATCCGTGAGAGAGTTTTGAAGCAAGCTGAGGAGGCTTTGAAGGGTAAAGGCAAGAGTTCTGGTGGTGAGAAGTTGTATAAAGGGGTCAATGCTTATGTTGATTACAAGGCTGGCTTCAGAAGGGAACATACAATTTCAAGTGAAAAAGCTGGTGGAGCACATGGGCCGCTTAGGGCTTCTGCTCATATAAGAGCTTCAGCAAGATTTGATTATCAGCCTGATATTTGCAAGGATTACAAGGAGACGGGTTATTGTGGTTATGGAGATGCGTGCAAGTTTATGCATGACCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGAGGAAGTAGAGAAAGCAAGGAAGAGAAAATTAGCTATGAAATCTGACGATGGGGATGAGGATACTTCGGAACAGAGTGATGAAGATGAAGAAGATGCCTTGCCCTTCGCTTGTTTTATTTGTCGCGAGCCTTTTGTGGATCCTGTTGTGACCAAGTGCAAGCATTACTTCTGTGAGCATTGTGCACTAAAGCACCATGCAAAGAATAAGAAATGCTTCGTTTGCAACCAGCCTACGCTCGGAATCTTTAACACGGCTCATGAGATACGCAAAAAGATGGCACAGAAGATCATACAAATATGAAAACAAAAGGAAGCTGCTGCCATTGTAGAACTTTGTAAAAGCAGATATTCTCATTGAAGGTCTGTTTATAACTTTGGTGATTAGATATGCAAGTTGCCTCAAACATCTTTCAAATATGTTAAGCACAGGAGGTTGTTTTTTATTCTTTTATGAGTCATTGTATTTTTGTTAACATCAAAGAATGTGTGAGATAGTATGTTATAAATTA 1541 43.02 MTDTGENQPPEQVCSFFRKPTKNKNIRKRTVDEDEEGSKTETSLLLNQKKAPKTESKLYFSSGPSKNSLSNESAEPNKPIFQFESSKEIQVHHDSRATATLETETDFSRDARAIRERVLKQAEEALKGKGKSSGGEKLYKGVNAYVDYKAGFRREHTISSEKAGGAHGPLRASAHIRASARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWEEVEKARKRKLAMKSDDGDEDTSEQSDEDEEDALPFACFICREPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHEIRKKMAQKIIQI 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 51580420 51583858 - XM_039028869.1 Bhi04g01992 33601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g01992 323 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 209 IPR000571 GO:0046872
Bhi04g01992 323 SUPERFAMILY CCCH zinc finger 182 214 IPR036855 GO:0046872
Bhi04g01992 323 SMART ring_2 261 298 IPR001841 -
Bhi04g01992 323 ProSiteProfiles Zinc finger RING-type profile. 261 299 IPR001841 -
Bhi04g01992 323 MobiDBLite consensus disorder prediction 232 252 - -
Bhi04g01992 323 MobiDBLite consensus disorder prediction 41 77 - -
Bhi04g01992 323 PANTHER ZINC FINGER PROTEIN 183 1 318 IPR039971 -
Bhi04g01992 323 ProSiteProfiles Zinc finger C3H1-type profile. 183 211 IPR000571 GO:0046872
Bhi04g01992 323 SMART c3hfinal6 183 210 IPR000571 GO:0046872
Bhi04g01992 323 MobiDBLite consensus disorder prediction 1 77 - -
Bhi04g01992 323 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 1 318 - -
Bhi04g01992 323 CDD RING-HC_RNF113A_B 259 299 - -
Bhi04g01992 323 SUPERFAMILY RING/U-box 260 304 - -
Bhi04g01992 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 318 IPR013083 -
Bhi04g01992 323 Gene3D - 181 215 - -
Bhi04g01992 323 ProSitePatterns Zinc finger RING-type signature. 276 285 IPR017907 -
Bhi04g01992 323 MobiDBLite consensus disorder prediction 26 40 - -
Bhi04g01992 323 Pfam Zinc finger, C3HC4 type (RING finger) 260 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g01992 Bhi-Chr4:51580420 Bhi03g01959 Bhi-Chr3:41436736 9.77E-06 dispersed
Bhi04g01991 Bhi-Chr4:51580420 Bhi04g01992 Bhi-Chr4:51580420 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1030 PF13920 zf-C3HC4_3 5.50E-09 CL0229 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g01992 K13127 - csv:101221334 608.986