Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02053 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTCTACAGCGGTGAAATGGACATGGGTATGGGTTATTACACCGATGATGATGACCCTGATGCTGAGGATTTCGTCGACGACGATACCGATGATTACTTCGAGTCCCGCCGCCGCGAGCAAAATTATACAATACTAAATGAGTCAGATATAAGACAACGCCAAGAGGATGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGCGTAGCTGCCATTGTCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCCGATGAAACTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGATCGAACCTGTGGAATCTGTTTTGAGTCGTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGTCGTTGAGATGTCCTGATCCTTCTTGTGGTGCTGTGGTTGATCAAGACATGATTAATTCATTGGCCTCCAGTGAAGACAGGAAGAAATATGCTCGTTATCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCGCCTGGTTGTGAGTATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTCTGCTGGAAATGCACGGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCCGAGTCTGAAAATATGAACTGGATATTGGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCTGATCATGGTGAAAGAACTGGTGGTTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCAAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAATCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGCAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAATATTTGCAAGGTGAGGCCGAGTCTGGATTAGAAAGGCTTCATCAATGCGCCGAAAAGGAACTACTCCAGTTCCTTAATGCAGAAGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAGCTTGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTAAACTCTCACGGAGCAAGCAGCGGCACAACGAGCTCAAAAAACACAGCAGGAAGTAGTAAAGGAGGGAGAAGCGGACGAGGTAAGGGAGTGAATCGAACTGCTAGTTCGACCAGAAGTGGCGACAATGGCACTCATTGGTCATGTGAACACTGTACCTTTGTGAACACTAGATCTGCTACCACGTGCGAGATGTGCCATCAACGCCATTGAAAACCTCTGGTTTCAATCAAAGTAGAGTAAGAGAGTAATCAACAACGACGAGAAACAGAATGATTTGGTGGGTTTGCGAACCCTTTTTTTTATGTGTTGATTATTTGAAAAAGGAGAAAAAAAGGAAGATAAAAAAGGACTGCTGTGATGATGATTGGAAAACAGCAGGGGATGGATGGTGTGTGTTGAGAGAGGGAAATGTCAAATATGATCTCAATGTAAATAGTTGGCAGTATAAATTAACAAATTTGTGTTGTCCAAAAATGTGGCTTTCACTTGCTGGTTTATAAATGTCTCGTACAAATACAGGTGGGAGATTATAACTACTAGTGTTGAAATAATGCATTAAAGTTTCTATCATGCCCAA 2143 42.37 MDSEDDLHYSTDVESVDDDCDFYSGEMDMGMGYYTDDDDPDAEDFVDDDTDDYFESRRREQNYTILNESDIRQRQEDDITRISSVLSISRVAAIVLLRHFNWSVTKVHDEWFADETRVRKQVGLLEAPVVHVLNARDRTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLSLRCPDPSCGAVVDQDMINSLASSEDRKKYARYLLRSYVEDNKKTKWCPAPGCEYAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKNTAGSSKGGRSGRGKGVNRTASSTRSGDNGTHWSCEHCTFVNTRSATTCEMCHQRH 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 54773226 54780060 - XM_039029108.1 Bhi04g02053 33662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02053 591 ProSiteProfiles Zinc finger RanBP2 type profile. 560 591 IPR001876 -
Bhi04g02053 591 SMART ibrneu5 275 345 IPR002867 -
Bhi04g02053 591 SMART ibrneu5 209 271 IPR002867 -
Bhi04g02053 591 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Bhi04g02053 591 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 539 IPR031127 GO:0004842|GO:0016567
Bhi04g02053 591 SUPERFAMILY RING/U-box 138 218 - -
Bhi04g02053 591 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Bhi04g02053 591 SUPERFAMILY Ran binding protein zinc finger-like 563 589 IPR036443 -
Bhi04g02053 591 Gene3D - 562 591 - -
Bhi04g02053 591 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 539 - -
Bhi04g02053 591 Pfam Ariadne domain 358 519 IPR045840 -
Bhi04g02053 591 SMART zf_4 566 590 IPR001876 -
Bhi04g02053 591 MobiDBLite consensus disorder prediction 523 565 - -
Bhi04g02053 591 SUPERFAMILY RING/U-box 290 338 - -
Bhi04g02053 591 MobiDBLite consensus disorder prediction 523 543 - -
Bhi04g02053 591 Gene3D - 267 522 - -
Bhi04g02053 591 Coils Coil 357 377 - -
Bhi04g02053 591 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Bhi04g02053 591 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Bhi04g02053 591 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Bhi04g02053 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 220 IPR013083 -
Bhi04g02053 591 ProSitePatterns Zinc finger RanBP2-type signature. 568 587 IPR001876 -
Bhi04g02053 591 MobiDBLite consensus disorder prediction 551 565 - -
Bhi04g02053 591 SUPERFAMILY RING/U-box 210 278 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02053 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1164.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02053 Bhi-Chr4:54773226 Bhi06g00947 Bhi-Chr6:26084715 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi10g02044 . 164 589 ARIADNE family AT4G34370 72.2 2.7e-183 639.0
Bhi10g02046 . 164 593 ARIADNE family AT4G34370 71.5 4.0e-182 635.2
Bhi10g02043 . 164 550 ARIADNE family AT4G34370 76.0 4.5e-178 621.7
Bhi10g02045 . 164 543 ARIADNE family AT4G34370 76.8 1.0e-177 620.5
Bhi10g02046 . 58 544 ARIADNE family AT2G16090 76.7 8.1e-224 773.9
Bhi10g02045 . 58 544 ARIADNE family AT2G16090 76.7 8.1e-224 773.9
Bhi10g02044 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-223 772.3
Bhi10g02043 . 58 542 ARIADNE family AT2G16090 76.8 2.3e-223 772.3
Bhi10g02046 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02044 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02045 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02043 . 38 543 ARIADNE family AT3G27710 61.4 2.9e-182 636.0
Bhi10g02046 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi10g02044 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi10g02045 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi10g02043 . 44 522 ARIADNE family AT3G27720 54.2 1.9e-143 506.9
Bhi04g02053 . 61 535 ARIADNE family AT1G05890 73.3 5.2e-217 751.5
Bhi06g00947 . 63 391 ARIADNE family AT1G05890 73.3 2.3e-156 550.1
Bhi06g00949 . 21 345 ARIADNE family AT1G05890 73.8 5.1e-156 548.9
Bhi06g00948 . 17 341 ARIADNE family AT1G05890 73.8 5.1e-156 548.9
Bhi04g02053 . 16 588 ARIADNE family AT1G65430 69.3 7.4e-245 844.0
Bhi06g00947 . 25 392 ARIADNE family AT1G65430 76.2 6.0e-178 621.7
Bhi06g00948 . 16 342 ARIADNE family AT1G65430 79.2 5.1e-169 592.0
Bhi06g00949 . 21 346 ARIADNE family AT1G65430 79.4 6.6e-169 591.7
Bhi04g02053 . 58 454 ARIADNE family AT2G31780 58.4 5.8e-144 508.4
Bhi06g00947 . 50 392 ARIADNE family AT2G31780 55.4 4.0e-121 432.6
Bhi06g00949 . 21 346 ARIADNE family AT2G31780 56.4 2.2e-119 426.8
Bhi06g00948 . 17 342 ARIADNE family AT2G31780 56.4 2.2e-119 426.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02053 Bhi_Chr04 FPKM 5.689038 3.845285 6.528301 8.042749 6.35661 2.445461 6.800489 9.761463 8.099403 9.342755