Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02165 TCAAGTTAAACTACAGAAAACCCATCGTCGTCGTCGTCGTCATCATCATCCTCCTCACAACGACACGCCAAAATCCGATTCATGAATGGGTCCATTTTCAACAGCATTCGCCATCATTACCACTCGATTTTTCATCATTCGTTTTTCTGTTCTCCCAATTCCCTCTCTCTCAAATCCCAGCTCGGCAATTTCAGCTTTCGATTCCCTCTCTAAATTATCAATAACAAAAGTTGTTCCCAATGTTCCCCTTCACTCATTGAGCGGAGAAATCTAAGGAAAACCCCCTTCAAATTTCTCTCTCTCTCTTTCATTCTATGATTCTAAAAGTGCCGGCCATGGCCGGCCAATCTCGTCTCCTTTTCCCCATCCATATCTCTCACTCCAAATCCTTCTCATCATCCCCTTTTCCCTTTCCTCTGCAAAATCTCCAAATTCCAATCCCTAAATTCCACTCTCTAATCCATGGGCTGTGCACAAACGAAGCATTCGGTGAATTCGCCTTCTGGGGGAGTTGAGAAGCTGAAATTGGAAAATGGGTATGCTGGGATTGAAGGTTTTATCGCTCATCGGAGGTCGACGGGGAAAAGGAGATATGTCAGCAGGGAGTCGTCTGAAGCAGAGAAGCCTCATGGCGGTGATGGCGGCGGCGGGAATGACCAATTTGGTTCAGAGAAGAGTGAACTAGTAGATGGGTGGCCCAAATGGCTTACTAGCAATATTCCTAAACATGTGTTGGCTGGCTTGGTACCCAAGAGTGTGGAGGCCTATGACAAGCTTGATAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAAGCTCGAGATAGGGAAAGTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACAACAGAACCTGAGAGTGTGAAGTTCATGGCAAGAGAAATTATGATACTGCTGAAACTGGATCACCCCAACATTGTCAAACTTGAAGGATTGGCTACCTCAAGAATGCAATTCAGTCTTTATCTTGTTTTTGATTTTATGCAGACTGATTTGGCTCGAGTTATTTCCCACCCTGATGTATGGCTTACGGAGCCTCAGGTCAAATGCTATATGCATCAGCTACTCTCTGGTTTGAAGCATTGCCATGATAAGGGGATACTACATCGCGATATCAAAGGATCAAACCTGTTAATCGACAAAAATGGGATGCTGAAGATTGCCGATTTTGGGCTTGCCATTTTCTTCAGTCCAAAGAGGCATCTTACTAATCGTGTTGTGACTCTTTGGTATCGAGCTCCGGAGCTATTGTTAGGTGCTACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGATGCCTCTTTGCAGAAATGTTCACGGGAAGGCCGATTCTTCCAGGTCGAACAGAGGTTGAACAACTCCACAAAATTTTCAAGTTATGTGGTACACCATCTGAAGAATATTGGAGAAAACTCAAGCTGGCACCAACTTTCAGACCTCCACAGTCCTATCGACCTAGTCTCGGAGAGTTGTTTAAGCATTTGCCCTCATCTTCTCTAGGCCTACTCAGCACTCTACTTGCTTTGGAGCCTTCATATCGTGGCTCTGCATCTTTAGCTCTCGAGAATGAATTCTTTCACACAAGCCCACTGGCATGCAGCCTTTCGGATCTTCCAGTAATCCACAGGGAGCCCGATGAACAGGATCAAACGAATCGGCAGAAGTCTAGGAATGCTAAAGTGACAAGGCGTTCTAATACACACCGAGAGCGGCGGAGGAAAGATTTTACCGGCGGAATACCAAAAGAAGAATCCAACATTCCCAAACAGCAAATGGGAGATGGTGACGAGCAAAATGAAGAGCGAGGGAGTACTACGACGAGCACCTCCTCAAGTGTTAATACGGGAGTGCGAAAGGGGAGTACAATGATGAGCACTTCCTCAAGTGTTAGCACAGGAGGGCGAAAGACGACGAGCACGTCTTCAAGCATGAACACGGGAGGAGGAAAGGAGAGCTCTCACTTCTTGCTATCTCCAATTTCATATTCTAATAGGAAATCGTCAAGAACCCAGGACCATCTTGAGACTGCCAAGAACCTCAACTTGCCTCCATTGCCTAAGATGAGAGAATACTCGACCTTCAACATCGAAGACCATGGTGGACATATCACAGGTCAGGTTCGGAGGTCGGTCTCGACCAGAGATTTGAGGAACTTGGGGCGAAAAGAGCATTTGAAATTTTATGCCGTTGATGATTAGGCTAATGTAATGGTCCTTGATGGTGTCTTTTTTTTCTTCATCTTTTTATTTTATTTTATTTTATTTTATTTTAAATGTTTTTCTTGTATGTTTTAGGTGCTTGATATTTTAACTTTTTATTTTCTTCAATGGATTCATATATTTGAAAACTGAAATAATTTGCTATTTTTAAATAGAGAGCAAGCCTAGATGTTAGTGTTGTTTGATAGTTTTG 2443 43.76 MGCAQTKHSVNSPSGGVEKLKLENGYAGIEGFIAHRRSTGKRRYVSRESSEAEKPHGGDGGGGNDQFGSEKSELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRESGKIVALKKVRFDTTEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFDFMQTDLARVISHPDVWLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGMLKIADFGLAIFFSPKRHLTNRVVTLWYRAPELLLGATDYGVGIDLWSAGCLFAEMFTGRPILPGRTEVEQLHKIFKLCGTPSEEYWRKLKLAPTFRPPQSYRPSLGELFKHLPSSSLGLLSTLLALEPSYRGSASLALENEFFHTSPLACSLSDLPVIHREPDEQDQTNRQKSRNAKVTRRSNTHRERRRKDFTGGIPKEESNIPKQQMGDGDEQNEERGSTTTSTSSSVNTGVRKGSTMMSTSSSVSTGGRKTTSTSSSMNTGGGKESSHFLLSPISYSNRKSSRTQDHLETAKNLNLPPLPKMREYSTFNIEDHGGHITGQVRRSVSTRDLRNLGRKEHLKFYAVDD 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 59210358 59214951 + XM_039030843.1 Bhi04g02165 33774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02165 588 PANTHER CYCLIN-DEPENDENT KINASE 57 501 - -
Bhi04g02165 588 ProSiteProfiles Protein kinase domain profile. 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g02165 588 MobiDBLite consensus disorder prediction 399 510 - -
Bhi04g02165 588 MobiDBLite consensus disorder prediction 38 71 - -
Bhi04g02165 588 MobiDBLite consensus disorder prediction 458 510 - -
Bhi04g02165 588 Gene3D Transferase(Phosphotransferase) domain 1 185 425 - -
Bhi04g02165 588 Pfam Protein kinase domain 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g02165 588 SUPERFAMILY Protein kinase-like (PK-like) 97 386 IPR011009 -
Bhi04g02165 588 PANTHER CELL DIVISION PROTEIN KINASE 57 501 - -
Bhi04g02165 588 SMART serkin_6 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bhi04g02165 588 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Bhi04g02165 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Bhi04g02165 588 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02165 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101209601 1007.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g01421 Bhi-Chr3:29729100 Bhi04g02165 Bhi-Chr4:59210358 1.01E-172 dispersed
Bhi04g02165 Bhi-Chr4:59210358 Bhi06g00004 Bhi-Chr6:201278 1.21E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87713 PF00069 Pkinase 2.60E-67 CL0016 Bhi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02165 Bhi_Chr04 FPKM 1.430626 2.227777 2.125076 2.342524 4.347185 2.604147 4.582984 4.156909 4.147068 4.0544