Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02196 GCCGTTTTCTTATGAGGTCCTCTGGCGCTTTATTCTCCTTTCAATCCCAAAATGTTCAGTGAAGGAAACCACGTCGCCATAGCCATCTATAAATGCTTCTCTCTCTCTTCCCGTTTTCTCTTTTCAACTCCATTTCTTCATCCACTGACCTACACAAATTCACAATGGGATCGCCCTCCTCTCAGATCAATGCCTACCATCTCTCCTTTAAGGTTCTCCTTATTGGCGATTCCGGCGTCGGCAAAAGCAGCCTTCTACACACCTTCATTTCCGCCTCTCTCCACGATCTTACTCCCACCATTGGTGTGGATTTCAAGATCAAGCAACTTACGATTGGTGGGAAGAGGTTGAAGCTGACTATTTGGGATACTGCTGGGCAAGAGAGGTTCAGATCATTAACTAGTTCATACTACAGAGGTACACAAGGGATCATTCTTGTTTATGATGTGACTCGGAGAGAAACCTTTACAAACTTATTGGATGTATGGGCAAATGAAGTTGAGCTTTATTTGACAGATCAGGACTGTGTCAAGATGCTCGTTGGAAACAAAGTTGACAGAGAATCTGAAAGGGCTGTAAGCAGAGAAGATGGGATTGCACTAGCCAACAAGCTTGGATCTTTGTTTCTTGAGTGCAGTGCTAAAACCAGAGAAAATGTAGAGAAATGTTTTGAAGAACTTGCAGTTAAGTTTAAGACAAGCCAGGAGGGGACAATTCCCCTCTCCCCTTCCTTCTTTGCTTCTTCGCTTCGCCCTCGATCAATTCTAGATTATGGAGGTTCCCAGTTTCTTGGAGGAAAGATCCACTATGTTAAAGAGGAACATTTTAAGGCAAAAGCAGGAAAGTCAAGCTCAACATAGTGGTGGTTGTTGCTCTTAGGAGGCAACTTATATAAAAATCACATCATTGTATATGTAAATTTCTTCTCTTACACTTGCTTTCTCCCATTCAGTTGTAAGTTATTATTTGTGCTGTCTGAAAGGGAAAAAAAACTCACATAATTACATTGATTTGCTTTGTGTAGAGAGCTAAATTCCTTTTTTGGGTCCAAAAATAAGGTAAAAATATGTAAAGTCTTGCAAAGTTGCTCCTCACTTAAACTCATAGTCTAAACTATGATGGACACTAGGGATGAAGGTCTATCAGTGTGGTAGGATAAGACCATTAGTATAATTCTACATTTTATTT 1188 40.57 MLLSLFPFSLFNSISSSTDLHKFTMGSPSSQINAYHLSFKVLLIGDSGVGKSSLLHTFISASLHDLTPTIGVDFKIKQLTIGGKRLKLTIWDTAGQERFRSLTSSYYRGTQGIILVYDVTRRETFTNLLDVWANEVELYLTDQDCVKMLVGNKVDRESERAVSREDGIALANKLGSLFLECSAKTRENVEKCFEELAVKFKTSQEGTIPLSPSFFASSLRPRSILDYGGSQFLGGKIHYVKEEHFKAKAGKSSST 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 60397890 60401884 + XM_039028407.1 Bhi04g02196 33805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02196 255 SMART arf_sub_2 25 204 - -
Bhi04g02196 255 ProSiteProfiles small GTPase Rho family profile. 30 203 - -
Bhi04g02196 255 SMART rho_sub_3 41 204 IPR001806 GO:0003924|GO:0005525
Bhi04g02196 255 ProSiteProfiles small GTPase Rab1 family profile. 34 253 - -
Bhi04g02196 255 CDD Rab18 39 199 - -
Bhi04g02196 255 PANTHER LD21953P-RELATED 33 200 - -
Bhi04g02196 255 SMART ras_sub_4 36 203 - -
Bhi04g02196 255 Pfam Ras family 40 199 IPR001806 GO:0003924|GO:0005525
Bhi04g02196 255 PRINTS Transforming protein P21 ras signature 39 60 - -
Bhi04g02196 255 PRINTS Transforming protein P21 ras signature 61 77 - -
Bhi04g02196 255 PRINTS Transforming protein P21 ras signature 79 101 - -
Bhi04g02196 255 PRINTS Transforming protein P21 ras signature 143 156 - -
Bhi04g02196 255 PRINTS Transforming protein P21 ras signature 178 200 - -
Bhi04g02196 255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 201 IPR027417 -
Bhi04g02196 255 SMART rab_sub_5 39 203 - -
Bhi04g02196 255 SMART ran_sub_2 44 245 - -
Bhi04g02196 255 ProSiteProfiles small GTPase Arf family profile. 32 200 - -
Bhi04g02196 255 TIGRFAM small_GTP: small GTP-binding protein domain 39 195 IPR005225 GO:0005525
Bhi04g02196 255 ProSiteProfiles small GTPase Ras family profile. 30 255 IPR001806 GO:0003924|GO:0005525
Bhi04g02196 255 Gene3D - 32 209 IPR027417 -
Bhi04g02196 255 PANTHER RAS-RELATED PROTEIN RABC2A-LIKE 33 200 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02196 K07910 RAB18; Ras-related protein Rab-18 - csv:101212460 317.005
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02196 Bhi-Chr4:60397890 Bhi11g02046 Bhi-Chr11:58369309 6.74E-102 dispersed
Bhi04g02196 Bhi-Chr4:60397890 Bhi04g02197 Bhi-Chr4:60397890 5.43E-147 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1182 . . . . . . . . . . Cma01g01016 . Car01g00897 . . . . Bhi04g02196 . . . . . . . . . . . . . . . Cone17ag0804 Cone20ag0409 . . . . . . . . . . . . . Cmo01g01058 . . . . . . Cpe02g00861 . . . . . . . . . . . . . . . . Chy03g00809 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000246 3 6 3 2 3 5 8 5 4 5 4 5 7 5 5 6 5 9 7 5 5 5 4 5 4 5 5 6 10 3 154
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02196 Bhi_Chr04 FPKM 1.289082 1.714707 2.030399 2.22791 3.975634 4.605088 4.399648 4.53693 4.300363 4.258968