Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02389 TTAGTAGGAAGCCAAGCGAAAGACGGGTCACAAAGCAACTCAACGCGTCCGAGTCACCTCCCTCACTCGACTCGCTCCCTCATCTTCTCCATCGTCATACCACAGCCGGGTTTTTCATCTTTCGCATAATTTTAAGAGACCCCATCATCAAAACTTTTCGACTCAAAGCAATCCTTGTCGTTTTTAGACCTACACAATCAACCCCATTTACTCGATTCTGTTCTGTAAGTCTCGGATTTCCCTTATCAAGGATCGTTCGGATTCACATTACTCAAAATCAACTAGCTGTTGCAACTATTGCAGACATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTATACCTGAACGGCGTGCAATGCGGGTTCATGCAGCTCGTCCCGTTAACTCAAACTCGCTTGCCTTTCTCGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCAAGAGCTATGGCAGCCAGTGGCCTTCTTGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGGGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGATAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCCGTTCATAAATACAAGGTTCCGGGTCCTCAAAGCGATCCCTCTGTAAATCAGCAAGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTTAGTTAATGCAGTTGGCAGTACCAAGACCTCTGAGGATGAACTCACATGCAGCGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCGTGGCTGCGACAGCAGGGAACATGCCCTGTTTGTAAATTTAGAGCGGTGTCCGGGTGGTCAGAACAGGGGCAAGGGGAAACTGATGCTTATATGGTTTAATTGGATATCGAACGATGCTTGACAACTCATTAAATAGCAGAGGACATGAACAGACGTGGTGTAATTAGGTTAAGGGTAGAGGCATTACAGGAATTGCAGTTGCCGCTCTGTATCTTTGAACTTCTGACGAGCCATTTAATTGTATTCTTGAAGTTGATCATTTGTGATAGAGTCTCTGATCATTGTGAGTGAGCAGAGTTTTGTTCTTTCACTGTCTTCAATGTACTATTCCAATCCTTGTTAGCAAAGTACTTGTTACCTCTAGAACTAAACACTACAAGGAAAATTTTCTACA 1428 43.21 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVPGPQSDPSVNQQASSSESNEKRQDLVNAVGSTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 65385550 65389445 + XM_039029444.1 Bhi04g02389 33998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02389 275 SUPERFAMILY RING/U-box 205 262 - -
Bhi04g02389 275 SMART ring_2 214 254 IPR001841 -
Bhi04g02389 275 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 274 - -
Bhi04g02389 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Bhi04g02389 275 PANTHER TARGET OF ERK KINASE MPK-1 1 274 - -
Bhi04g02389 275 CDD RING-H2_PA-TM-RING 213 255 - -
Bhi04g02389 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 260 IPR013083 -
Bhi04g02389 275 MobiDBLite consensus disorder prediction 177 204 - -
Bhi04g02389 275 Pfam Ring finger domain 213 255 IPR001841 -
Bhi04g02389 275 MobiDBLite consensus disorder prediction 170 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02387 Bhi-Chr4:65385550 Bhi04g02389 Bhi-Chr4:65385550 0 dispersed
Bhi04g02389 Bhi-Chr4:65385550 Bhi05g01947 Bhi-Chr5:60389533 7.01E-13 dispersed
Bhi04g02388 Bhi-Chr4:65385550 Bhi04g02389 Bhi-Chr4:65385550 0 tandem
Bhi04g02389 Bhi-Chr4:65385550 Bhi04g02390 Bhi-Chr4:65386886 4.67E-170 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02389 K16283 - csv:101216306 499.59