Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02514 TTGAATGGCTCAATTTATGAAGTTATTATCATTATCATTTATCATATATATATTTTTTCCATCGTTTCCATATTGTTGAGGGAGTAGGCAAATTCAATCCCGAGAGTTTATCTCCCAGCGAATCAAGGAAACCAAGATTTTTCCTTCCGAGAGATGGAAGCTGATGTTTCCATTGATATTTTATAAACCCTAATCATCTTTTGTTCTTCGTTTCAATCTCTAATTCTCTCCCTTTTTCTCTCTCACTGATTAGGGTTTTTCGGTCCATGGCTTTCAGTGCTATGAATCCAGGTCTCGCCTTATTGTTTTCACTGATTTTGGTTGGCTGTTGCGGCTCTGCAGCTAATGTGGTATTGATTGGGACCAACGTTACTCGTTCCTTCGACTCCATTGAAGCTAATTTCGCTCCTTCAATAGAAAGTTCAGGGGAACCTGGGGTGTTATATCTGGCAAAACCTCTTGACGCATGCTCGACATTGGAAAACAAAACTGATCTGCCTGTAAACTCCAGTTCACCATTTGCGCTTATAATTAGAGGAGGATGTAGCTTCGAGGATAAAGTGAGGAGAGCCCAAGTGGCTGGATTTAAAGCTGCAATCATCTATGACAATGAAGATGGTGGCTTAATTGCGATGGCAGGGAGCTCAGCTGGTATTAGAATACATGCTGTATTTGTTACTAAAACATCTGTGCTTGCTACTTGTTTCTTCGTTCGTAGACATCGAATAAGACGAGGACGTCCTCGATCTTCTCATGCTCAAGAGTTCCGGGGAATGAGCAGACGTGTAGTAAAAGCAATGCCAAGCCTGATATTTACTACTGCTTTAGAGGATAATTGCACATCAATAACATGTGCAATATGCCTTGAGGACTATACTGCTGGTGAGAAGCTCAGAATTCTACCATGTCGTCACAAATTTCATGCCCTCTGTGTGGACTCTTGGCTTACTGCTTGGAGAACCTTCTGCCCTGTTTGTAAGCGAGATGCAAGAACTAGCAATGGTGATCCACCACCTTCAGAATCCACACCATTGCTTTCGAGTACTCCCAGTTCTGTTGCTTCATCCTCAATATTATCTTCTGTGAGATCATCATTGCCACCAAGCTCCGCCATTCAAATATCCCCTTCATTAAGATCGCCTTCGGTATCTCGGAACCACTCCCTCTCAAGCACTCCTTACCTTCAGCAGTCTCTGAGATCCTCCTACCGCCAATCCCCAACGTTGAGTGTGAGCAGAAGTTCAGTTGAACTCAGAAATGCATCTTCCCAAAGATCTCAGACTTCTCATTTGGTTTCGCCGTATTCCTCGTGTTACCCATCCATTTCACCTTTACATTCAAGATACATGATTCCGCTTATTCCGAGTCCAAGCAATGCCTCACCAAGCATCATTGGTTCTTCTAGTCATCAACATAATCCCTTGCATTGTAGTGGATCAGCTGCAAGCTTTTCTCCATTTGCTTCGGCTCGGTCTCTTCCTGAATGCTGATACAAGAGCGTTGAGAAAATCTTTCGCCCTGAGAAATTGGCAACCCTGTTTTCGCAGAGGGGGTTGAGGGGTTGGGTGAGGTATGGTTGAATTATGGCATCATGTGGTCTGTAAAGCGATTTGTTAGTTGTTGATCTGTCTAAATACCCTGGTTGGCCAGCATCATTGTATATTATTTCTCACGATTGCTCCATTTGTTTTGGGTTTGAAGTTCCATTTTGTGGTACATGTTGTAGAGGTTTTTAAAATTACAAAGTGAAGTAGAGTATATTCTTGTGGCGGTGGGTTTGTAATTCTTTAATGGATTGTGGGTTTAGATGCAGTGGAAGTGGATACTTAGTTTAAGAGCTAACCAGGAAAGGAACATTTGTAATATATACCACTTCTCTCTTTCCTTATCTTCCCA 1896 42.3 MAFSAMNPGLALLFSLILVGCCGSAANVVLIGTNVTRSFDSIEANFAPSIESSGEPGVLYLAKPLDACSTLENKTDLPVNSSSPFALIIRGGCSFEDKVRRAQVAGFKAAIIYDNEDGGLIAMAGSSAGIRIHAVFVTKTSVLATCFFVRRHRIRRGRPRSSHAQEFRGMSRRVVKAMPSLIFTTALEDNCTSITCAICLEDYTAGEKLRILPCRHKFHALCVDSWLTAWRTFCPVCKRDARTSNGDPPPSESTPLLSSTPSSVASSSILSSVRSSLPPSSAIQISPSLRSPSVSRNHSLSSTPYLQQSLRSSYRQSPTLSVSRSSVELRNASSQRSQTSHLVSPYSSCYPSISPLHSRYMIPLIPSPSNASPSIIGSSSHQHNPLHCSGSAASFSPFASARSLPEC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 67833005 67839179 - XM_039029205.1 Bhi04g02514 34123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02514 407 MobiDBLite consensus disorder prediction 241 262 - -
Bhi04g02514 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 243 IPR013083 -
Bhi04g02514 407 SUPERFAMILY PA domain 75 119 IPR046450 -
Bhi04g02514 407 CDD PA_C_RZF_like 16 141 IPR044744 -
Bhi04g02514 407 CDD mRING-H2-C3H2C2D_ZSWM2 195 238 - -
Bhi04g02514 407 Gene3D - 28 144 - -
Bhi04g02514 407 MobiDBLite consensus disorder prediction 246 262 - -
Bhi04g02514 407 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 141 338 - -
Bhi04g02514 407 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 10 141 - -
Bhi04g02514 407 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 141 338 - -
Bhi04g02514 407 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 10 141 - -
Bhi04g02514 407 MobiDBLite consensus disorder prediction 275 345 - -
Bhi04g02514 407 SUPERFAMILY RING/U-box 189 250 - -
Bhi04g02514 407 ProSiteProfiles Zinc finger RING-type profile. 196 238 IPR001841 -
Bhi04g02514 407 SMART ring_2 196 237 IPR001841 -
Bhi04g02514 407 Pfam PA domain 82 143 IPR003137 -
Bhi04g02514 407 Pfam Ring finger domain 195 238 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02514 K15692 RNF13, RZF; E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27] - csv:101218128 617.076
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02514 Bhi-Chr4:67833005 Bhi10g02338 Bhi-Chr10:60962558 3.78E-13 dispersed
Bhi04g02514 Bhi-Chr4:67833005 Bhi04g02515 Bhi-Chr4:67833005 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1441 . . . . . . . . . . . . . . Sed11g2306 . . Bhi04g02514 Tan11g0071 Cmetu03g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00772 Cam11g0807 Cec11g0788 Cco11g0794 Clacu11g1051 Cmu11g0912 Cre11g1252 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005523 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02514 Bhi_Chr04 FPKM 52.627571 56.484142 41.279533 38.700111 34.322247 37.99791 32.566174 58.328289 59.039345 52.247349