Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02522 CTTTTTTTTTAAGAAGGAAAAAGAAAAGGAAAAGAAAGGAGCGGTGAAGACAAACCAGAGCCTGATGGTTTATGTGGCTTTAAGCTACAAGCAAAGGACAAGAAGATTGGTGTCTTAGTGTGAGCCAATCTGTAGTTCGCATCTTCATAATTCTCGCACTGCCTCACCCTTCTTCTTCTTCTTCTTCAACCTCAACTCTCTACGCTTTTCACTTTCAATCCCTCCAATTTCAGGCATGCTAGGAAAATCGTTGGTGTCTCCCATATCAACCATTGATTCTGCTACTCGTTTCTGTTGTTCTACTCGCAGCATTGCCACAGCCATATCAGATGCTGCACGTTCAAATGTAAGTTTCTCCTATCATCCTGCGAAGCATATGATAAAGGATGTGAGAAGACAAACTCCCTATCCCAGTAAGTGGGAAATCTGTTCGACTACTCAAGTTGAAAGCTTGACATTAAGTGATGAGGATAGGAAGACATGGGAAGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCAGCCACATTCATTCACCCTACTGGGGTGAAGACAGAAAGAAGGAAGTTCCTAATATTGAAACTGTAAATGACATACTGGAATATCTGAGGACACTTGGTCTTTCGAATGACGATCTCTCTAAGCTGCTAAAAAAATTCCCAGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTTAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCATTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTACAATGTTGATTGTAAAGGAGACTGCATCGCAAAGTGCACCAGATGCTGGGTTCGATTTTAGAGCTATAATGGGTCTCAATCTATGGTTGAATATTCTCAAAAGATAGATGAGAATAAACAGCTGTGTTTTTCTGATTATTCTTTACATGAATCCAAAAGGCCAACATTTATAAAGCAAAAAGGACACACCCATACACAGGTTGGGTCATTCTCCTACCACAAACACTCCAACATTATCAATTACAAGAGGCTTCTGTTGGAATAAAGGGTAGGTAGCTCTTCATTTGGGGTGACATCTTTCTAATTTCACGAGTTGTATCGTTTCATAAATAGGTACGTTTTTTTTTTTTTTCATAGTTAACCAATTTGAAAAAGAGACATGGTTATTCGAATGGCCACGAATCAGTATATAAAATATGTCTTTTCTTCAA 1256 39.81 MLGKSLVSPISTIDSATRFCCSTRSIATAISDAARSNVSFSYHPAKHMIKDVRRQTPYPSKWEICSTTQVESLTLSDEDRKTWEACRQALSVFSFSVEEQDKMLGKAFSHIHSPYWGEDRKKEVPNIETVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68049549 68059661 - XM_039029128.1 Bhi04g02522 34131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02522 216 Pfam mTERF 134 199 IPR003690 GO:0003690|GO:0006355
Bhi04g02522 216 Gene3D Transcription termination factor 3, mitochondrial 122 211 IPR038538 -
Bhi04g02522 216 SMART mt_12 148 180 IPR003690 GO:0003690|GO:0006355
Bhi04g02522 216 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 1 215 - -
Bhi04g02522 216 PANTHER CGI-12 PROTEIN-RELATED 1 215 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02522 - - - csv:101218603 395.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02521 Bhi-Chr4:68049549 Bhi04g02522 Bhi-Chr4:68049549 1.81E-163 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1416 . . . . . . . . . . . . . . Sed03g0682 . . Bhi04g02522 Tan11g0064 Cmetu03g0684 . Hepe02g3453 . Lcy10g2344 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011132 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1073 PF02536 mTERF 1.40E-09 No_clan Bhi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02522 Bhi_Chr04 FPKM 2.995781 4.432492 3.530564 3.830831 3.995607 2.192381 2.962536 2.753747 1.122325 2.011432