Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02523 AAAAATAAAACCTATATATATCCCTCCATCTTCACACCTGAGTTCATCCATCAAATTTTGGGCATATCTTTTTAGAGAAATGAAGCCACTCAGTCTTCTTTGCATTTTCATTATTCTTTCCATTCTCTTACAGGGTTTTTCAGAGGCTTTCACTACTGTGGATGAAGGGACCAACACAGTAGCTCTCACCAAAAAGTATCACTATCATCCAAAAATCAATTGCAAAAGGGAATGCTCAAGGAGATGCAGTAAAGTTTTCAGAAAGAAGATATGTATGCGGGCATGTGGAACTTGCTGCAGTCGTTGCCACTGCGTTCCGCCCGGCACTTACGGCAACCACCAAGCTTGTCCTTGCTATGCTCGCCTCAAGACCCATGGCAATAAGCCCAAGTGCCCCTAATTTCCTATTACTCTACTTTTCTAATACTATTTTCATTTATATATTTGGAGGTGCTTTAATTTCTACGTATTTTCCACTTATGCTTATACATTTTAAATACTATTAATGTCTATAAAAATGTCAAAACGAGCATAGCTCAACTGGCAAATATAATAGATGTGTTATCGATCCAGATGTATATGGTTTGAATTCACCTATTAAAACAGCTCAGTAAGCTTAGTTGGGTCCTTCTTCTCCCAAAATTCATTCTATTATGGACTTTTGTTATGGGTGAGCGTGTTTTGCAAGAGTTTTTCTCCCAGGCCATCTATATAGGGTTGGTGTTATTTTACCTATCAATATATCGAGGCCAAGGGTTTCTCTTGCATTTTGCTTTGCATTTTCTCTACCATGTTTTGTTTTTTTTCCGATTATGTTGATTCCCCCACTCCTATTGTACTATATATAAGCGGCTTGTGTTGCTTACAATTGGAATAAAAATCGGTGTTGTATTTTTTATAA 901 37.18 MKPLSLLCIFIILSILLQGFSEAFTTVDEGTNTVALTKKYHYHPKINCKRECSRRCSKVFRKKICMRACGTCCSRCHCVPPGTYGNHQACPCYARLKTHGNKPKCP 106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68050406 68053579 + XM_039029130.1 Bhi04g02523 34132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02523 106 Pfam Gibberellin regulated protein 47 106 IPR003854 -
Bhi04g02523 106 PANTHER GIBBERELLIN-REGULATED PROTEIN 9 10 106 - -
Bhi04g02523 106 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 10 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02523 - - - csv:101218129 218.009
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g00396 Bhi-Chr4:10323694 Bhi04g02523 Bhi-Chr4:68050406 4.49E-17 dispersed
Bhi04g02523 Bhi-Chr4:68050406 Bhi09g02090 Bhi-Chr9:59494794 2.93E-24 dispersed
Bhi04g02523 Bhi-Chr4:68050406 Bhi09g02088 Bhi-Chr9:59471248 2.30E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1414 . . . . . . . . . . . . . . . . . Bhi04g02523 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00782 Cam11g0814 Cec11g0796 Cco11g0801 Clacu11g1042 Cmu11g0903 Cre11g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014690 0 1 0 0 0 1 0 1 1 0 1 1 1 0 1 1 1 0 1 1 0 1 0 1 0 0 1 2 1 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02523 Bhi_Chr04 FPKM 111.181938 113.848167 42.055214 42.910801 31.839552 36.591412 32.071854 61.061298 57.696342 60.25769