Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02527 ATCTGTCTACTTTCCTTCAGAATTTTCGTTTTCCCGCATCATTTTTCCTTATAGGACCCGTACTAAAATGGCTGAAGCGAGCGCCAACATAGGCGTTCTTAATCTTCCGCCATTTTTGAACTCTTCATCGCGTACTTCCTTACCCTCAAGAACTCTGAAAGCCGAGGCCGCAGTAACATCGAAACTCAAAGCCAATACATGGAGAACGAAGCCGCTGAAGCTAACTGTCTTTGCAGCGTCTTCTCGTTATACTTCTGCGGCTTTTAATCAAACAGATTGCGGGAAGTTTCAGCCAAGAATTGAAGCTGATAATCCAAGAAATGGAAGGGTTTTTTTCCTGGATGTGAATCCTTTATGCTACCAAGGTAACAGACCTAGTTTGCATAATTTTGGTCGCTGGCTTTCCATCTTCTTCGAGGAAGTTAGCCACAGTGATCCTGTTATTGCTGTTTTTGATGGGGAAGGAGGTAGTGAGCATCGCAGGCTGTTGTTACCCTCATATAAAGCACATCGGATCAAATTCACGAGACAACCATCTTCACAAAGATTTACAAAGGGAAATTCTAGAAGGTCATATCAAGTGATAAGAGATGCTCTCAGAAACTGTAATGTTCCAGTTGTAAAGGTTGATGGTCAAGAAGCAGATGATGTTGTTGCTACACTTGTGGAACAAGTTTTGCAAAGAGGGGTTCGGGTGGTAATAGCCTCTCCTGATAAAGATTTCAAGCAGTTGATTTCAGAAGATGTCCAACTTGTGATGCCTTTGCCGGAGCTCAACAGATGGTCCTTTTACACCTTAAGGCACTACCTAGCTCAGTACCACTGTGATCCGTGCTCTGACTTGAGTCTTAGATGCATTATGGGTGACGAGGTAGATGGCGTTCCAGGAATCCAGCATGTTGCTCCTGGATTTGGTCGAAAAACAGCATTGAAGCTCTTGAAAAAACATGGTTCTTTGGAGAATCTTCTCAGTGCTGCTGCAATCAGAACTGTGGGCAAACCTTATGCACAAGTTGCACTTACAAAGTATGCCGAATACTTACGAACAAACTATAAAGTTTTGGCCTTGAGGAGAGATGTTGATGTTCAATTTCAAGATGAGTGGTTGGTTGAAAGAGACAGACAAAACGATTTGGCTATTTTATCTAAGTTTGTAGAAAACACTGAGAGAAACTCACTCGCTCAACCATCAAAACGGGTCTAAATCACCCTATGGTTGAATACATATACAGGTAAAATTAGCTTAGCCTTTGTTAAATTATGATTTTATGCTTGGAAATATACGTACTTCCATACTATTAGTTGCTGAAATAAAAAAATATATTATTCCTTTTCTCCTCATATGTTGTGAAATGAAACTTATCTATATGCAATATTTGGGCTCTAGTAGTACACGCCTCATTTGTACTTTGCCACTACTTTATCTCCTTCCAGTTCCAGCTGAGTTTAGACAAAGTTCTTAAAATAAAGACAGTATAAATTGTTTCA 1488 40.32 MAEASANIGVLNLPPFLNSSSRTSLPSRTLKAEAAVTSKLKANTWRTKPLKLTVFAASSRYTSAAFNQTDCGKFQPRIEADNPRNGRVFFLDVNPLCYQGNRPSLHNFGRWLSIFFEEVSHSDPVIAVFDGEGGSEHRRLLLPSYKAHRIKFTRQPSSQRFTKGNSRRSYQVIRDALRNCNVPVVKVDGQEADDVVATLVEQVLQRGVRVVIASPDKDFKQLISEDVQLVMPLPELNRWSFYTLRHYLAQYHCDPCSDLSLRCIMGDEVDGVPGIQHVAPGFGRKTALKLLKKHGSLENLLSAAAIRTVGKPYAQVALTKYAEYLRTNYKVLALRRDVDVQFQDEWLVERDRQNDLAILSKFVENTERNSLAQPSKRV 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68122182 68126898 + XM_039028104.1 Bhi04g02527 34136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02527 378 Pfam 5'-3' exonuclease, N-terminal resolvase-like domain 113 231 IPR020046 GO:0003677
Bhi04g02527 378 SUPERFAMILY PIN domain-like 87 249 IPR029060 -
Bhi04g02527 378 PANTHER DNA POLYMERASE I 40 370 IPR002298 GO:0003887|GO:0006261
Bhi04g02527 378 Pfam 5'-3' exonuclease, C-terminal SAM fold 261 345 IPR020045 GO:0003677|GO:0003824
Bhi04g02527 378 Gene3D - 250 332 - -
Bhi04g02527 378 CDD H3TH_53EXO 264 334 IPR020045 GO:0003677|GO:0003824
Bhi04g02527 378 CDD PIN_53EXO 123 232 - -
Bhi04g02527 378 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 261 364 IPR036279 -
Bhi04g02527 378 SMART 53exo3 86 350 IPR002421 GO:0003677
Bhi04g02527 378 Gene3D - 84 248 - -
Bhi04g02527 378 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 40 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02527 - - - csv:101219234 668.692
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02527 Bhi-Chr4:68122182 Bhi09g00134 Bhi-Chr9:2993307 4.29E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1397 . . . . . . . . . . . . . . Sed03g3083 . . Bhi04g02527 Tan11g0060 Cmetu03g2067 . Hepe02g3457 . Lcy10g2348 . . . . . . . . . . . . . . . Blo17g00151 . . Bda13g01440 . Bpe14g00416 . Bma02g00184 . . . . . . . . . . . . . . . . Cla11g00787 Cam11g0821 Cec11g0801 Cco11g0806 Clacu11g1037 Cmu11g0898 Cre11g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011265 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02527 Bhi_Chr04 FPKM 6.710409 6.523245 9.663351 10.417844 10.610855 10.493605 10.083343 10.249849 10.583608 11.00215