Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02533 GAAAAAGAAAAAGAAAAAGAAAAAAGAAAGGAAAAGCAAAAGAAAAAGAAAAGAAGAGACGAGAGCCCCAACCATCTTCCTTCTCCCTCTCTTTTTCGTGGAACAGCCCCCCCACCTTCTGCGTGTAGCTTCAGCCGGCCAAGAAATCTTCACGTCGGCGACGACTGGCAGCGACTACCAGCGAGTGACCGGCGCGAGACCCTCCCTCCGACATCCCATTATTGTCTTTAGCAGCGTGCTGCTTCATCAACCACGCGAGACTCGGAGTTCCAGTGACGGCGGCGGTGACCATCGACGCGAAACCCACAACATTGACGACTTCAGAAAATCCGCGCAGTCTGAACGCCCTGGAAGCGACGTTTTCCTCCCTTTCGGCAAGAAGAATGGCAACATTTGAACTCTACCGCAGATCAACAATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTCCAGAACGGTACACTTAGTCCTGAGCTTGCCATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACCGAGGCTCTGGAATCACAGGTGAAAAGCAAGGGACATTTGCACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCATTGTTTAAAAATGAGGATTCCAACGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTCTCACAATAAGCTTTCATACATCAAGTTTATTCGATGAAATTTGCATAATTATTTGCTGATGGTGGACGGAAGAACAGTGTGACGGTGAGGAAATGGCCATCCAGGAAGAGATTCGAACATGATTCTGTATATAGTCATCAACCTGAACAACAAAAATTTACATTGACGATACATTTGACTGTAATTGGCTTTTAAAGTTGATTACATAAGAATCATACGACCCTTCTAGTTTAGTGAAAATAAAACATGATATTGTGCTATTAATTTTCTTTTGTACTAGTTCCTTTGAAACTTGAAACTTATTATGTCATTTATCAAAACCTATTTTCTGTACATTAGAA 1024 42.48 MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKGHLHTYRFCDNVWTFILQDALFKNEDSNETVGRIKIVACDSKLLSQ 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68216819 68228679 - XM_039028700.1 Bhi04g02533 34142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02533 102 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 4 54 - -
Bhi04g02533 102 CDD TFIIA_gamma_C 56 98 IPR015871 GO:0005672|GO:0006367
Bhi04g02533 102 Gene3D - 3 53 IPR009083 GO:0005672|GO:0006367
Bhi04g02533 102 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 4 49 IPR015872 GO:0005672|GO:0006367
Bhi04g02533 102 Pfam Transcription initiation factor IIA, gamma subunit 56 97 IPR015871 GO:0005672|GO:0006367
Bhi04g02533 102 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 50 98 IPR009088 GO:0005672|GO:0006367
Bhi04g02533 102 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 102 IPR003194 GO:0005672|GO:0006367
Bhi04g02533 102 PIRSF TFIIA_gamma_hum 1 102 IPR003194 GO:0005672|GO:0006367
Bhi04g02533 102 CDD TFIIA_gamma_N 4 49 IPR015872 GO:0005672|GO:0006367
Bhi04g02533 102 Gene3D - 54 101 IPR009088 GO:0005672|GO:0006367
Bhi04g02533 102 PANTHER TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2 1 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02533 K03123 TFIIA2, GTF2A2, TOA2; transcription initiation factor TFIIA small subunit - csv:101220187 195.667
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02533 Bhi-Chr4:68216819 Bhi04g02535 Bhi-Chr4:68216819 9.87E-72 dispersed
Bhi04g02533 Bhi-Chr4:68216819 Bhi04g02534 Bhi-Chr4:68216819 5.09E-61 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1347 . . Bda01g00865 . . . . . . . . . . . . . Cpe13g00692 Bhi04g02533 . . . . . . . . . . . . . . . . . . . . . . Blo18g00148 . . Bpe02g01103 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00567 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004386 2 7 0 1 1 0 2 0 1 2 0 1 0 1 2 1 1 2 2 1 2 1 1 1 1 1 1 2 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02533 Bhi_Chr04 FPKM 5.138728 6.021825 8.002244 9.908199 15.410361 13.279112 15.238935 7.923314 8.453311 8.516264