Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02540 ACGAAATGCTAATACAAAGGTGTACGTATTTCCATATTCCCTCAAAAAAAGAAAAATCCTCACCGATTTCCCCCTTCACTCCAAGTCTTCCGGTCAGTGGGCAAGTCAAAAATGAAAAGCCTACCGATTTGTCCAAATTCGAAACCTTTTCTTCGTAATTTCCTCTCCGGTGTCGTTCCCGTCCATTATCTCTCAGATTCTGAATGATTCGAAGGCCTAATTTGGTGATTGTTCATAGAATTTTCTCGCGATCTCTCTATTTTGGGGGCGGAAATTTGGTTGAACTTGAGAATATTCAACCTAGCGGAGTAAGCTGGTTTCTTCTGAATTCGTAACAAAAAGGAAAAGTCTATCGGTTTTTCCCCTATTGCTTTAGATCTGTAACCGATAATTTACTTGCAATTTGTTTGGGTTTTGGAAGAATTCGCCAAAATTACTTGCAATTTTGTCACTTGAAGATCCAGACTGATGGACATCACATACTTTAAAATGAAAGGTGGATAGTAAATGGGTGTTTGCTTAGCTTAGCCTTGATTTCTAGGAGTTGTTTCTGTGTGCTGCTGAATTTGCTGGTAATCTTCCATCCTTCAAATGGATCCAAGTCAGAGCAAAATTTACTACTGTTCTGTTTCAAGGGGCGAACGTATGCTCTATGTGTATAGTAGTGGTGACCAGGAGATTGAGAATTTAGCTGATTTATGCTTGAAAAGTGCCCCTCCTTATCACAAGTGGTATTTTGAAACGTTGGGTAAAAAAACGTTTGGGTTCTTGATGAAAGAAGGGTATATTTATTTTGCAATTGCTGATGAAGTTATAGGTAATCAGGCTCTTCTCCAGTTTCTAGAGCAGTTAAGAGATGAATTCAAAAGGGTAGCAAAGAAAGGTTCACGAGGGAGTTTCTCAAGTATGAACTCCATTAGTCTGCAAGAACAGCTAGTGCCTGTAATTTGTAAGTTAATCACCTCATTGGAGAATGTCTCCCACAATAGTAAGGATTGGATGGCTGAAACTCCCTCCTCAAACAATGGTCTGTCTCCATCTCCGAGTAATGTGAATGGCCAAGTGGACATTTTGGCTTCCACGAAAGCCCCTCTGCTCGGGAAATCGAACAAACCAGAGAAGAAAAAGGGAAAGGATCATGTGGTAACGATGAGAGGTATTGAGATGGAGGAGCATAGAAAATCTACAGATAGAGGTTTGAAGATTGATTCAGTCTCTTTGGAATCCAGTAATCAGGGTGGATCGGGGTCTTCAATTCCGGTGCAGAAAGACAGTAATCCATTGAGGAGATCAAACTCTCAAAGCATCCGTAGAAGATGGTGGCGTCATGTGAGGATCGCGCTTGCTGTTGATGCTGTTGTATGTCTGATATTGTTTGTCATTTGGTTGATTGTCTGCAATGGTGTTTCTTGTGTTCGCTGAGAGTTTTATCTTTTTGTATATGGAACTTGAAAGATGAAATGGGGGAGATTAGAAAGGGTCAAGGGAGATATGTTAATGAGGTTAAAGTGTTTCTGAAGGGCCTTGACTGAGTTCACACTTCTGAAAAGTTGACAGCAGAATAAAAAAAGTTGTAAGTATATGCATACGAATTGTTAATAGGTATGATTATTCATATACTTATTGCTATTATATTTTAGGCTCTCACTTCTGCGGATTTCTTCAACTTAATAGTTACTTTTGCTGCGATATCTGTTTTGGGTTCTCAATTGATAATGATATTTCACTTGTTAATAA 1737 39.21 MDPSQSKIYYCSVSRGERMLYVYSSGDQEIENLADLCLKSAPPYHKWYFETLGKKTFGFLMKEGYIYFAIADEVIGNQALLQFLEQLRDEFKRVAKKGSRGSFSSMNSISLQEQLVPVICKLITSLENVSHNSKDWMAETPSSNNGLSPSPSNVNGQVDILASTKAPLLGKSNKPEKKKGKDHVVTMRGIEMEEHRKSTDRGLKIDSVSLESSNQGGSGSSIPVQKDSNPLRRSNSQSIRRRWWRHVRIALAVDAVVCLILFVIWLIVCNGVSCVR 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68303598 68305631 - XM_039030646.1 Bhi04g02540 34149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02540 276 ProSiteProfiles Longin domain profile. 53 93 IPR010908 -
Bhi04g02540 276 CDD Longin 9 115 IPR010908 -
Bhi04g02540 276 Gene3D Longin domain 2 133 - -
Bhi04g02540 276 SUPERFAMILY SNARE-like 7 113 IPR011012 -
Bhi04g02540 276 MobiDBLite consensus disorder prediction 169 235 - -
Bhi04g02540 276 MobiDBLite consensus disorder prediction 171 204 - -
Bhi04g02540 276 PANTHER PHYTOLONGIN PHYL1.2 1 275 IPR044783 GO:0016021
Bhi04g02540 276 MobiDBLite consensus disorder prediction 135 156 - -
Bhi04g02540 276 MobiDBLite consensus disorder prediction 205 235 - -
Bhi04g02540 276 PANTHER PHYTOLONGIN PHYL1.2 1 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02540 - - - csv:101220426 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02540 Bhi-Chr4:68303598 Bhi06g00461 Bhi-Chr6:10554385 2.12E-24 dispersed
Bhi04g02540 Bhi-Chr4:68303598 Bhi12g01510 Bhi-Chr12:48856537 1.42E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1753 . . . . . . . . . . . . . . Sed03g0691 . . Bhi04g02540 Tan11g0053 Cmetu03g1265 . Hepe02g3461 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00791 Cam11g0824 Cec11g0806 Cco11g0812 Clacu11g1033 Cmu11g0894 Cre11g1268 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014170 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02540 Bhi_Chr04 FPKM 3.686375 3.773395 9.735821 9.188466 32.744946 28.260862 32.598869 19.068375 20.518871 20.531933