Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02549 AAAATCACCGGGGGTAATATCTCACCGTTCCAGAACCATCCCATCTCCGAGAGTCCTAGAAAAGGCTGCAGCCTCGACGAAAGCTTGCACTGCTTCCGCTGTCGAAAAGTAACATTGACGTCTGCTTCTGCCAGAATCGTGTCATCGGCGACAGTCCTCTATCCCCAGCGGTATTATCACTGTCCACCTAGCGACAGCTACCTCGAGTAAACGATTAAGGAACAATATGTTCAAGAAGGCGGCAGAAGCGAAGTTACACCAGAGATTATCTGGTGCAGACAGGAAGAAGCTGAAGAGGACTGTTAAAGAAAGGTTCCCCGGAGCTTCCGACGCCGATATTGATGTCTTGCTTCCTCCCAAGGTCGAGTTTTCTGTTGCCAAGTTCCAAAATCGCGTCCACATATATAGTCTAGAAGGAGGCTTTCCTATGTTTTTTGACGTCGATGGGAGAGGAACTGACATATTCCCCACAGTTTTTGCACTCTGGATGGTACCAGAGTTGTTGCCTGCCTTCATTCTGAAGGGGGGTGAAGTCTCTCGCTATGTGATAGGAGGAGCAGACTTGATGTTCCCCGGTATTCATGTTCCTGCTGAAGGTCTGCCCTCTTTTTCATCTGGGGAACCATGGGCTGTGAAAGTCCCTGGCAATGCATCTCCTATTGCTGTTGGTGTTACCACCATGAGTAGCACTGAAGCATTAAAAGCGGGTTTACGTGGAAAGGCTCTGAGAATTCTACACTACTACAGGGATTCCCTTTGGGGATCAGTAGAGGGTCATTATGTGCCGAATGCAGGTTTTTTGGAAGATGCTGTATATGGAGATCCTGCTTTGGCATCATCTTCACAAACCGATGGCTCTTGTGAAGGTACTGAAGCTGACGATGCTTCAAATTATGGACAGAATGACAGTGGCAATAAAGAAGTTGGGGGATCTGTCGATGAAACTACAAGTGATGTTCTTGATGAGTCTGGCGTTGTTCTAACAGCACAAACTGATTCAACTACTGATGAAATCGTTTCTGGTGTGAATGATTTGAAGGTTGTAAATGATATTTCCACTGAGGAACCAAATGTGCAACATACTCTATCAGCTGAAGATGTGGACAAGCTTCTCGATAAATGTCTTCTTCAAGCCCTACATACAACAGTGAAAGACAAAGATTTTCCACTTCCTGGAAGCACTCTATGGTCAAATCATGTATTGCCTTGTCGGCCTCCTGGCATGATGCTAGACATCAAGAAATCATCCTACAAGAAATTGTCAAAGTGGTTGCAAGCTAAATCCTCTACTGGACTGATTACAGTGAGAGAGGATAAGCACAAAAAAGAGACGGTTTTGTACTCTGTTAACCATAAGCATCCAGACTACATTTCCTTTAAACCAGAGAAGCAACAGGTAGAGAAAATTGATCAGAGCAACAATCACGGTCCAAAAGAAAGTTCATCCAATAAAATGCTTGAAGTAGCAGAGATATACAAGCCAAGTGTGCATGTCAATCCCATTTTTGTTACTGTGGGGGCGGACACTAGCAAACTTTACACTGCAGCAGAGGCTACTGATATTGTCTTCCAATACGTTGAGAAAGAAAAGTTGGAGAAACCAACAGATAAGACTAGAGTGGTCTTGGATGCAATATTATGCGATGCACTGTTCAAGGGGGCCATTAAGAAAGGAACAACATATCCAACAGAAATTCATAAAAAAGATATAGGTTCAACATTTATCAGCCGGATGCAACCTCATCATATTGTAACAAGAGGAAGTGAGTCTGTTGTTTGCAAAGGTGCATTAAAAACTATTCAAATAATGACAGAGCGACGCCAAGGAAATAAGAAAGTTACAAGACTTTCTGGATTGCAAACGTTCTTGTTGGATGCTGAAGCATTGGCATCAGAGCTTCAGAAAAAGTGTGCTTGCAGTACGACGGTGGCAGAGTTGCCTGGTAAAAAAGGGTATGAAGTTGTGGTCCAAGGTGGAGTCATTGATGGCTTGGCAAGACATCTGATTGAACAATATGGGATTCCAAAAAAGTACATTGAAGTACTTGATAAAACAAGGAAATGAGAGGCTAGAGCTGG 2079 43.67 MFKKAAEAKLHQRLSGADRKKLKRTVKERFPGASDADIDVLLPPKVEFSVAKFQNRVHIYSLEGGFPMFFDVDGRGTDIFPTVFALWMVPELLPAFILKGGEVSRYVIGGADLMFPGIHVPAEGLPSFSSGEPWAVKVPGNASPIAVGVTTMSSTEALKAGLRGKALRILHYYRDSLWGSVEGHYVPNAGFLEDAVYGDPALASSSQTDGSCEGTEADDASNYGQNDSGNKEVGGSVDETTSDVLDESGVVLTAQTDSTTDEIVSGVNDLKVVNDISTEEPNVQHTLSAEDVDKLLDKCLLQALHTTVKDKDFPLPGSTLWSNHVLPCRPPGMMLDIKKSSYKKLSKWLQAKSSTGLITVREDKHKKETVLYSVNHKHPDYISFKPEKQQVEKIDQSNNHGPKESSSNKMLEVAEIYKPSVHVNPIFVTVGADTSKLYTAAEATDIVFQYVEKEKLEKPTDKTRVVLDAILCDALFKGAIKKGTTYPTEIHKKDIGSTFISRMQPHHIVTRGSESVVCKGALKTIQIMTERRQGNKKVTRLSGLQTFLLDAEALASELQKKCACSTTVAELPGKKGYEVVVQGGVIDGLARHLIEQYGIPKKYIEVLDKTRK 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 68521865 68542488 - XM_039030711.1 Bhi04g02549 34158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02549 612 CDD eIF2D_C 525 607 IPR039759 -
Bhi04g02549 612 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2D 1 612 IPR039757 GO:0001731|GO:0003743
Bhi04g02549 612 Gene3D - 521 607 - -
Bhi04g02549 612 Pfam Pre-PUA-like domain 2 90 IPR041366 -
Bhi04g02549 612 SUPERFAMILY PUA domain-like 103 179 IPR015947 -
Bhi04g02549 612 MobiDBLite consensus disorder prediction 202 247 - -
Bhi04g02549 612 Gene3D - 1 185 - -
Bhi04g02549 612 SUPERFAMILY eIF1-like 490 608 IPR036877 GO:0003743|GO:0006413
Bhi04g02549 612 MobiDBLite consensus disorder prediction 389 408 - -
Bhi04g02549 612 ProSiteProfiles Translation initiation factor SUI1 family profile. 525 597 IPR001950 GO:0003743|GO:0006413
Bhi04g02549 612 ProSiteProfiles PUA domain profile. 93 174 - -
Bhi04g02549 612 SUPERFAMILY SWIB/MDM2 domain 406 507 IPR036885 -
Bhi04g02549 612 Pfam Translation initiation factor SUI1 523 600 IPR001950 GO:0003743|GO:0006413
Bhi04g02549 612 CDD eIF2D_N 9 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02549 K15027 EIF2D; translation initiation factor 2D - csv:101219792 1141.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi04g02549 Bhi-Chr4:68521865 Bhi05g00541 Bhi-Chr5:13058769 1.56E-16 dispersed
Bhi04g02548 Bhi-Chr4:68520738 Bhi04g02549 Bhi-Chr4:68521865 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1717 . Blo12g00811 . . . . . . . . . . . . . . . Bhi04g02549 Tan11g0045 . . Hepe02g3467 . Lcy10g2359 . . . . . . . Cone4ag1153 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00797 Cam11g0833 Cec11g0819 Cco11g0821 Clacu11g1027 Cmu11g0888 Cre11g1275 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008392 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02549 Bhi_Chr04 FPKM 9.122727 8.590367 0.872573 0.736241 5.464979 7.347556 5.201153 9.227943 8.547294 8.327854