Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi04g02590 TGGGAATCGGAGATGTTGGTATTGCTGCTTCATTTACTGCATTGCAAGAGAACAGATGAATCCATTTACTACCTTCCCAACTACCACCTTCAATTCACCCCTCCTATTAAAACCACTCTCCTTCACACTCACTTGATCGCCACTATATCAAGCAATTCCCTCCTTATTCTCTTTCCTTATTTAGCTTTTTCTCATACAAAGTAGAAGGGTGATGGGTAATCTTAAGGTTCACGGTGTGGCGGTTGTTATGGGAATGGTGTTGTTGTTTGGTGTAAGTCTTGGGCAATTTCAAGGAGGTGGAAACGGTCCCTTCACACGCGGCAATGGGGCCGGGAGAAGGGCGGAGATGGTTCCGGCCATGTTCATATTCGGAGACTCTCTCATTGACAATGGAAATAACAACAATCTTCCCTCTTTCGCCAAGGCCAACTATTTCCCTTACGGCATTGATTTCAACGGCGGCCCAACTGGCCGCTTCTCCAATGGCTACACCATGGTCGATGAAATAGCGGAGCTGCTTGGACTCCCATTAGTTCCTGCCTTCTCTCAAGTTTCTGGAGCCCAATCTCTGCATGGAGTCAACTACGCATCCGCTGCTGCAGGCATTCTTGACGTTACCGGAAGGAACTTTGTGAGTCGCATACCTTTCAATCAACAAATCAGAAACTTCGAGAACACGCTAGATCAGCTTAGTAACAATCTAGGGGCGGCGAACGTGGGACAATCCATCGGACGGTGCATATTCTTTGTGGGAATGGGGAGCAACGACTATCTTAACAACTATCTTATGCCCAATTACCCCACTCGAAATCAATATAATGCTCAACAGTACGCGGATTTGTTGGTCAGCCAGTACACGCAGCAGCTCACTAGGTTGTACAATCTGGGAGGGAGAAGGTTTGTGATAGCAGGGTTGGGGCTGATGGGGTGCATTCCAAGCATCTTGGCACAGAGCCCATCGGGAAGCTGCTCAGAAGAAGTGAACCAACTTGTTCGACCTTTCAATGTGAATGTTAAGAGCATGATAAACCAGCTGAATGCCAACCTTCCAGGAGCAAGATTTAGTTACATCGACATAGAACGCATGTTCCAGGACCTGCTTGTCAACTCTAGATTTTATGGGTTAAGTGTATTGAACAGAGGTTGCTGTGGAGTTGGGAGGAACAGAGGCCAAATCACATGCCTCCCTTTCCAAACGCCTTGTACCAATCGGGATCAGTATATCTTTTGGGATGCATTCCATCCCACCGAAGCAGTAAACATTCTCATGGCCAGGAAGGCTTTTAATGGCGACCAATCTGTTATTGCCCCTTTCAACATCCAGCAGCTGGCCACTCTTTGAACCAACCGCCCCTACAATTTTCATTTGCATCCTTACAAGTTTTGTTATGTCTTCCCTTCCCATGTAATGCAATGCAAAGAATTTACTCAATGTTTTTCATGCATAGCGATCCAACTGTCGTGGCTTTCCACAAAAATGAATCTACTATCAACCCATTTCAATACA 1507 46.18 MGNLKVHGVAVVMGMVLLFGVSLGQFQGGGNGPFTRGNGAGRRAEMVPAMFIFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLVPAFSQVSGAQSLHGVNYASAAAGILDVTGRNFVSRIPFNQQIRNFENTLDQLSNNLGAANVGQSIGRCIFFVGMGSNDYLNNYLMPNYPTRNQYNAQQYADLLVSQYTQQLTRLYNLGGRRFVIAGLGLMGCIPSILAQSPSGSCSEEVNQLVRPFNVNVKSMINQLNANLPGARFSYIDIERMFQDLLVNSRFYGLSVLNRGCCGVGRNRGQITCLPFQTPCTNRDQYIFWDAFHPTEAVNILMARKAFNGDQSVIAPFNIQQLATL 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 69589046 69590892 + XM_039028403.1 Bhi04g02590 34199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi04g02590 376 PANTHER OS05G0419800 PROTEIN 29 376 - -
Bhi04g02590 376 Pfam GDSL-like Lipase/Acylhydrolase 51 356 IPR001087 GO:0016788
Bhi04g02590 376 Gene3D SGNH hydrolase 40 362 IPR036514 -
Bhi04g02590 376 SUPERFAMILY SGNH hydrolase 124 357 - -
Bhi04g02590 376 CDD SGNH_plant_lipase_like 48 361 IPR035669 -
Bhi04g02590 376 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 29 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi04g02590 - - - csv:101203225 721.465
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02959 Bhi-Chr1:73236220 Bhi04g02590 Bhi-Chr4:69589046 6.26E-77 dispersed
Bhi04g02590 Bhi-Chr4:69589046 Bhi06g00015 Bhi-Chr6:280033 0 dispersed
Bhi11g00598 Bhi-Chr11:13799799 Bhi04g02590 Bhi-Chr4:69589046 4.15E-67 dispersed
Bhi11g00599 Bhi-Chr11:13799800 Bhi04g02590 Bhi-Chr4:69589046 1.29E-69 dispersed
Bhi04g02590 Bhi-Chr4:69589046 Bhi08g02134 Bhi-Chr8:61376134 3.20E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1660 Blo01g01668 Blo12g00832 . . Bpe02g00274 Bpe04g00304 . . . . Cma01g00840 . . . . . . Bhi04g02590 . . . . . . . . . . . . . . . . . . . . Cme09g00036 . . Bda11g00935 . . . . . . Cmo01g00880 Cmo09g01300 . . . Car09g01143 . . . . . . . . . . . . . . . . Lsi08g00047 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi04g02590 Bhi_Chr04 FPKM 114.626427 117.116951 89.025635 90.676903 34.301205 32.470711 31.50193 76.920494 81.616653 81.923691