Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00012 TTAGTGCTTCCTTCTTATTCGTCGCCGACCTTCGCTCCATTTGCTTCCCTTCTCCCCCGCCATTGATGATTCCTTGCACGGTCATTGTTTCTGATTGAAAATCGAGTGAATTTTTTTATTGAATTTCTCTTCTTCAGCCATTTCATTCGATGTACATCTTTGAATTTGAAGTGTAGTTGGTTGGATTAATGCAAGTATTTTGTGTTTCGGAAGAGGATCGATGAGTATAATCAGTAATCAAAGCCTCGAGGTCATTGATGTTTAAAGAGCGATTGCATTGGACATTCCTGTGTTTGGAAGTAGATCGAGGTTCCGATTGAAGTCAAGGTGTGTCTCTGTGTTAAATTCGTCGGCTCTGTCTAAACATCCTTGCAATTGAAGTGTGATTGGATTGAATGCATCTCTGTTGGGAAGAAGAACGAGGATTATTAAACAGAGGTGAGTAGGGAGAGACTGAAATTGGAGGAGGAAGAAGAAAAAGGGTGAAGTTTCGATGAGTGGAATTTTCGATCCGGTAGAAAATGGAGCAGAAGTACCCGTATGATAATGGAGTGATGATGACGAGAGACCCGAAACCAAGGCTGAGATGGACTGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGGCCGGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGTCATTTGCAGAAGTATAGACTTGGACTGCAAACACGAAAGCAAAATATGGCTGAGCAAAGGAATGAAAGTAGCGGGTCTCTTAGCAATTTCAGCGGAGTAGAGGAAGATGACAGAGGGATGCAAATTGCTGAGGCTCTAAAATCACATGTCGAAGTGCAGAAAACAATACTAGAACAACTCGAGGTACAAAATAAACTTCAAATGAGAATAGAGGCTCAAGGAAAATACCTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTTGCCATTAACGGTAACCTTGGTAGTCTTGAAGGCACAGGAATGCAGTTAATAAACTTTGATGCGGTTCTGTCAGATCAAATTGAAAAATTTAAGAAACAAGAAATGAGAGGAAGCATAGCAAACGTAATTGATGGTAGTAAGAAGAACGGTGATTCACTCATCCAGATATGCAAAGTGGAGGCTGGAGAAGAAGACATAAACGAGTTTAGTGTTGAAAAGAATATGATCAACTTTGATTTGAACTCCAAAGGTGGCTATGATTACAGTGCGAATGCGGCTGAAGTACTTGACGCCAAAGTGCTTCCTTGTTCAAGGTAA 1304 41.41 MEQKYPYDNGVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNMAEQRNESSGSLSNFSGVEEDDRGMQIAEALKSHVEVQKTILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINGNLGSLEGTGMQLINFDAVLSDQIEKFKKQEMRGSIANVIDGSKKNGDSLIQICKVEAGEEDINEFSVEKNMINFDLNSKGGYDYSANAAEVLDAKVLPCSR 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 339953 343350 + XM_039031357.1 Bhi05g00012 34222

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00012 260 Gene3D - 17 74 - -
Bhi05g00012 260 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 18 72 IPR006447 GO:0003677
Bhi05g00012 260 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Bhi05g00012 260 MobiDBLite consensus disorder prediction 79 98 - -
Bhi05g00012 260 Pfam MYB-CC type transfactor, LHEQLE motif 105 152 IPR025756 -
Bhi05g00012 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 246 IPR044848 GO:0003700
Bhi05g00012 260 SUPERFAMILY Homeodomain-like 18 75 IPR009057 -
Bhi05g00012 260 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 246 - -
Bhi05g00012 260 MobiDBLite consensus disorder prediction 79 96 - -
Bhi05g00012 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00012 - - - csv:101219098 460.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00012 Bhi-Chr5:339953 Bhi05g00014 Bhi-Chr5:340462 1.97E-151 dispersed
Bhi05g00012 Bhi-Chr5:339953 Bhi05g00013 Bhi-Chr5:339955 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi09g02029 CCT 1 177 G2-like Transcription Factor Family AT5G42630 60.4 9.3e-42 167.9
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT1G25550 54.3 7.2e-52 201.8
Bhi07g01367 . 19 257 G2-like Transcription Factor Family AT1G25550 55.4 4.7e-51 199.1
Bhi04g01984 . 20 254 G2-like Transcription Factor Family AT3G25790 51.4 1.7e-42 170.6
Bhi08g00576 CCT 1 245 G2-like Transcription Factor Family AT3G46640 52.8 1.6e-58 224.2
Bhi11g02825 . 5 185 G2-like Transcription Factor Family AT3G46640 51.3 7.7e-37 152.1
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT5G05090 56.7 2.6e-75 279.6
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT5G05090 53.0 1.2e-67 254.2
Bhi01g00234 . 12 315 G2-like Transcription Factor Family AT4G13640 58.0 3.6e-65 246.1
Bhi01g00235 . 12 310 G2-like Transcription Factor Family AT4G13640 54.9 2.3e-56 216.9
Bhi01g00234 . 12 267 G2-like Transcription Factor Family AT3G24120 63.9 1.5e-79 293.9
Bhi01g00235 . 12 262 G2-like Transcription Factor Family AT3G24120 60.2 2.8e-70 263.1
Bhi05g01982 . 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01981 CCT 16 185 G2-like Transcription Factor Family AT3G24120 57.7 2.8e-41 166.8
Bhi05g01980 . 16 175 G2-like Transcription Factor Family AT3G24120 57.5 3.1e-40 163.3
Bhi10g00928 CCT 22 195 G2-like Transcription Factor Family AT3G24120 54.1 1.5e-39 161.0
Bhi05g00013 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi05g00012 . 6 152 G2-like Transcription Factor Family AT3G24120 55.6 1.3e-38 157.9
Bhi03g00735 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 5.4e-37 152.5
Bhi06g00890 . 1 229 G2-like Transcription Factor Family AT1G69580 55.9 1.8e-49 194.1
Bhi06g00889 . 1 223 G2-like Transcription Factor Family AT1G69580 56.7 3.1e-49 193.4
Bhi05g01980 . 1 382 G2-like Transcription Factor Family AT1G79430 54.5 1.6e-88 323.9
Bhi05g01982 . 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi05g01981 CCT 1 392 G2-like Transcription Factor Family AT1G79430 52.5 2.4e-84 310.1
Bhi10g00928 CCT 1 364 G2-like Transcription Factor Family AT1G79430 52.2 5.1e-74 275.8
Bhi01g00234 . 39 203 G2-like Transcription Factor Family AT1G79430 61.2 5.3e-39 159.5
Bhi01g00235 . 39 198 G2-like Transcription Factor Family AT1G79430 61.2 2.9e-37 153.7
Bhi03g00736 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g00737 . 83 325 G2-like Transcription Factor Family AT2G01060 63.2 5.8e-58 221.9
Bhi03g02516 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 1.2e-90 330.9
Bhi11g02825 . 1 284 G2-like Transcription Factor Family AT3G10760 57.8 1.2e-80 297.7
Bhi03g02516 . 1 203 G2-like Transcription Factor Family AT2G40970 61.1 1.5e-61 233.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008955 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
1075 PF00249 Myb_DNA-binding 2.70E-07 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi05g00012 Bhi_Chr05 FPKM 13.747968 14.967432 13.913551 14.825947 16.941767 20.804447 14.001284 14.813145 12.210468 10.677727