Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00048 AGAGAGAGAATTATGTGGTAGCTGTAGATTTTATCAGTTTTTAAAGTTGGAAGAAATTCATTCTTTGAGAATGGAAGGAGCTCAACAAAAACTGATGCTCTCTCTGCTTTTAATGGCGGATTGAGAAACACAAACCCCAATTTCTTCAAACTTATGAGATGGGGGATTAACTTTTTTCCTTTCAAACATGAGATGAGATGACAAGTTTCATATTTAATCTTCATCATCTTCATCTTCATCATTTGTAGCAGTGTTTTTCTGTTCTTCAACTCTCATCAATCACTTCTTCTTCTTCCTCTTCTTGCTTTTCCCTTCCATGGCGAAAACAGGCGTGTTTGATTCTGATCCTACAGTTATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACAGAGACTTATCGTTGCTATTATTGATGACGATAATTACTCCACCGACACCATTGATAACGCTAAAGAAATTCTTTCTGCACTTAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTCGAGAATCTCATTTGTCCTGAAGAATTTCGTTGTCCGCTTTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGACAAACCCTTCATTCAGAAATGGCTGAAATCAGGGAACAGGACTTGCCCCAGAACTCAGCAAGTTCTTTCACACACCAACCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTACAAGTCGGGGAATTGAGTTGCAAGACCGTGTCCGTGTTCATTATCTTGATGATGATGTGATAACAGAGGCTGATCGTGATCGTTTTCTCACGTTAATAGAGAAAATGTCTATGACAATATCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCGCAAAGTAGTAGTATTCACACGGATCTGCAAGAAGATGTAATCACAACACTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTATCGAAACACCCAATGTAATACCTCTTCTAATGGAAGCGTTAGGATCAGGAACCATGGAAACAAGGAGCAATGCAGCTGCAGCCCTATTTACACTGTCTGCTCTCGACTCAAACAAAGCAATCATTGGGAAAGCTGGTGCGTTGAAACCACTTATCAAGCTTTTAGACGAGGGGCATCCTTTATCAATTAAAGATGCTGCTTCAGCAATATTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCTGTGCGAGATGGTGCAGTCCGAGTGCTTCTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTTGCAATGCTATCGTCCCATCAAAAAGCTATCGAAGAAATTGGTGAACTTGGAGCCGTCCCTTTCTTACTCAGAATTATCAGGGAAAGTTCTTGTTCACGTAACAAGGAAAATTGCATTGTGATCATCCATGCAATCTGCTTATACGATCGAACCAAATGGAAGGATATGAGGGAGGAAGAGAAATGCTATCGAACTATCTCCGAACTTGCTCAGAATGGAACTTCTAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAAAGACTAAACAGGGTAGTTAATATGACCCACACTGCCTAATGAAATTCCTCGGCATTAAAAACTTGTAGATTCTGCGTCTAAATCCGGCACTCTCGTCTTTGCTAAGACTCGGTCATCTGTTTGGGTAATCTTCAATCATCTTTTTTCTTTTTGTATATTCTCTTATCCTGTGGAGTCTAATGTCGATTTCACTGCCAAGTTCATCAGTTAGTCAATGTGAATAAATGTGAAGTGAGTTCTGTTGATATTAGTTTTTCTTTTTCTTTT 1927 40.17 MAKTGVFDSDPTVMGKATELKRELQRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDKPFIQKWLKSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSSIHTDLQEDVITTLLNLSIHDNNKKLVIETPNVIPLLMEALGSGTMETRSNAAAALFTLSALDSNKAIIGKAGALKPLIKLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSSHQKAIEEIGELGAVPFLLRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNMTHTA 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1187629 1190044 + XM_039032313.1 Bhi05g00048 34258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00048 460 CDD RING-Ubox_PUB 77 119 IPR045210 -
Bhi05g00048 460 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Bhi05g00048 460 Gene3D - 356 455 IPR011989 -
Bhi05g00048 460 PANTHER U BOX DOMAIN-CONTAINING 5 458 - -
Bhi05g00048 460 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Bhi05g00048 460 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515
Bhi05g00048 460 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Bhi05g00048 460 SUPERFAMILY RING/U-box 73 149 - -
Bhi05g00048 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 458 - -
Bhi05g00048 460 Gene3D - 223 355 IPR011989 -
Bhi05g00048 460 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Bhi05g00048 460 SMART arm_5 368 409 IPR000225 GO:0005515
Bhi05g00048 460 SMART arm_5 288 328 IPR000225 GO:0005515
Bhi05g00048 460 SMART arm_5 246 287 IPR000225 GO:0005515
Bhi05g00048 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00048 Bhi-Chr5:1187629 Bhi06g01042 Bhi-Chr6:28529291 1.02E-115 dispersed
Bhi05g00048 Bhi-Chr5:1187629 Bhi08g00619 Bhi-Chr8:20447784 3.10E-90 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00048 - - csv:101215688 811.986