Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi05g00049 ATGTGAAATTTGGTGTCAACACATCTTTTTGCCTGGAAATGTCCTGAACCTTAACCCTCTCCTCTCTTCTCAAGAAAACGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTAATCAATCACTCTAAAATCCCATTTCTGCAAAATTCTCTCTGTTTCTAGATTTGCTGAATCAAAGAAAAACCCCATAGTTACATTCAGCATCGTCGCTTTGATTTCCTTGATTGGTAATGGGGCCAGGAGTGGCCTTGTCTGGCGCTGCAAAACAGGCCGAACTTCTCAGAAAAGATGGCAACCACTATTTTCAAAAGGGTCGAATTGGAGCTGCCATTGAAGCTTATACCGAGGCGATTACACTATGCCCGAATGTTCCTGTTTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGGGCTATTCAGCTTGATAGCAGTTCTGTCAAGGCACATTACATGTTAGGATTAGCATTAATACAAAACAAAGAATATCCGGAAGGAATCAAGCATTTAGAGAAGGCTTTGGATCTTGGTAGGGGTGCAAATCCGAAGAGTTATATAGTAGAGGAGATATGGCAGGAACTTGCTAAAGCAAAATACAGGGAGTGGGAACAAGCGTCTACCGAACGTTCATGGGAATTGCAGACATTGAAAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAGTCTGAACTAGAAGGGTTCGTAGATGAAGCCGAAATTGCTCATCGGAATCAATTAAAATCGCTAAGAAGTGTGTTTGAAAAAGTTGCCGAGGCAGATGCGCCGTCAGAGGTACCTGATTATCTTTGTTGTAAAATCACACTTGATATTCTTCGCGACCCTGTTATTACTCCGAGTGGGGTTACGTATGAGAGAGCAGTGATTCTTGACCATTTTCATAAGGTTGGTAACTTTGATCCCATAACACGGGAGCTGCTTGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTACAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAGTTTAAGGAAACTTGTATTTTGAATGGGAACTCAATCAAGTTGATGGTTATGCCTGTCGTGAACGAATGGAAATACCTCAATCCCATGTCGCTAATGTCGTGATTATCTCCTCGATTCTTGTATATGGATCGTCGATTACGGTTTGTCATATATCATGCTTTCCATGACATTCTGAGGCTGTACTGTCAATTAAGTATGTGAGGTCCTGTCTTCTGATTTGGTCTTGTGCAGATTGTTACTATGAACTTGTTAATCTTCCTGTACAGTTATTACTTAAACCTTTGATTATGGTTTAGTTATTGAGGACTCTGTTCAGCAGGTA 1393 41.49 MGPGVALSGAAKQAELLRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDSSSVKAHYMLGLALIQNKEYPEGIKHLEKALDLGRGANPKSYIVEEIWQELAKAKYREWEQASTERSWELQTLKEACEAALEQKYFLDQSELEGFVDEAEIAHRNQLKSLRSVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFHKVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTV 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1196176 1203227 - XM_039031009.1 Bhi05g00049 34259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi05g00049 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Bhi05g00049 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515
Bhi05g00049 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Bhi05g00049 281 SUPERFAMILY RING/U-box 199 278 - -
Bhi05g00049 281 PANTHER OS08G0113300 PROTEIN 8 279 - -
Bhi05g00049 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515
Bhi05g00049 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515
Bhi05g00049 281 SUPERFAMILY TPR-like 12 135 IPR011990 GO:0005515
Bhi05g00049 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Bhi05g00049 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Bhi05g00049 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Bhi05g00049 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Bhi05g00049 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Bhi05g00049 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Bhi05g00049 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Bhi05g00049 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Bhi05g00049 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 8 279 IPR045200 GO:0000209|GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi05g00049 Bhi-Chr5:1196176 Bhi05g00051 Bhi-Chr5:1196176 0 dispersed
Bhi05g00049 Bhi-Chr5:1196176 Bhi05g00050 Bhi-Chr5:1196176 2.06E-163 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi05g00049 K09561 - csv:101215457 546.199